Protein Alignment Ubx and hoxc3a

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001128157.3
• Gene: hoxc3a / 30421
• ZFINID: ZDB-GENE-980526-532
• Length: 263
• Species: Danio rerio
• Alignment Length: 116
• Identity: 49/116 - (42%)
• Similarity: 62/116 - (53%)
• Gaps: 22/116 - (18%)

  Fly   240 YPWMAIAGECPEDPTKSKIRSDLTQYGGIST-DMG-KRYSESLAGSLLPDWLGTNGLRRRGRQTY 302
            ||||             :...:|..:..|:. :.| .:||...|       :..|...:|.|..:
Zfish   121 YPWM-------------RETHELMHFSSINAMESGDSKYSNGEA-------VVRNSSSKRARVAF 165

  Fly   303 TRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 353
            |..|.||||||||.:.||.|.||:|||..|.||:|||||||||||||.||:
Zfish   166 TSSQLLELEKEFHFSAYLCRNRRLEMAELLKLTDRQIKIWFQNRRMKYKKD 216

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	36/55 (65%)
hoxc3a	NP_001128157.3	None