DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and hoxb1a

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_571190.2 Gene:hoxb1a / 30337 ZFINID:ZDB-GENE-990415-101 Length:316 Species:Danio rerio


Alignment Length:408 Identity:95/408 - (23%)
Similarity:124/408 - (30%) Gaps:150/408 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NSYFEQASGFYGHPHQA------TGMAMGS----------GGHHDQTASAAAAAYRGFPLSLGMS 50
            |:|..:|.  |.|..||      ||.|..|          |.:...||:|......|.       
Zfish    20 NAYSPKAG--YHHLDQAFPGPFHTGHASDSYNADGRLYVGGSNQPPTAAAQHQHQNGI------- 75

  Fly    51 PYANHHLQRTTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGG 115
             ||:|..|..|                                                      
Zfish    76 -YAHHQHQNQT------------------------------------------------------ 85

  Fly   116 GGGGGGGGAGGT-GGAGNANGGNAANANGQ--------NNPAGGMPVRPSACTPDSRVGGYLDTS 171
                   |.|.| ||.|..:.|..|.||..        |....||....|.          ..||
Zfish    86 -------GMGLTYGGTGTTSYGTQACANSDYAQHQYFINPEQDGMYYHSSG----------FSTS 133

  Fly   172 GGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASN 236
            ..||  |.|..||......|....|.....|........|::.. |.:..:|.........|...
Zfish   134 NASP--HYGSMAGAYCGAQGAVPAAPYQHHGCEGQDHQRAYSQG-TYADLSASQGTEKDTDQPPP 195

  Fly   237 HTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQT 301
            ...:.||.:    ..:|.|:   ..:.:||                         .|.:...|..
Zfish   196 GKTFDWMKV----KRNPPKT---GKVAEYG-------------------------LGPQNTIRTN 228

  Fly   302 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ---------AI 357
            :|..|..|||||||.:.||||.||:|:|..|.|.|.|:||||||||||.||..:         :.
Zfish   229 FTTKQLTELEKEFHFSKYLTRARRVEIAATLELNETQVKIWFQNRRMKQKKREKEGLAPASSTSS 293

  Fly   358 KELNEQEKQAQAQKAAAA 375
            |:|.:|...:.:....|:
Zfish   294 KDLEDQSDHSTSTSPEAS 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 32/55 (58%)
hoxb1aNP_571190.2 Homeodomain 226..279 CDD:459649 32/52 (62%)

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