Protein Alignment Ubx and hoxd4a

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001119917.1
• Gene: hoxd4a / 30329
• ZFINID: ZDB-GENE-980526-214
• Length: 256
• Species: Danio rerio
• Alignment Length: 205
• Identity: 72/205 - (35%)
• Similarity: 87/205 - (42%)
• Gaps: 52/205 - (25%)

  Fly   166 GYLDTSGGSPVSHRGGSAGGNVS--------VSGGNGN-AGGVQSGVGVAGAGTAWNANC---TI 218
            ||...|..:...|.|..:..|.|        |.|.:.. .|.||..........|....|   .|
Zfish    55 GYYSPSQDTDFQHPGIYSRSNYSEQPYSCSTVQGSSVQPRGHVQDQASTPSPFPAQTEQCPAVQI 119

  Fly   219 SGAAA-----QTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSE 278
            ||:..     .|...:.:........||||            .|:.        ::|
Zfish   120 SGSRTGGQQQNTKTQNGIPTKQPAVVYPWM------------KKVH--------VTT-------- 156

  Fly   279 SLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWF 343
                 :.||:.|..  .:|.|..|||.|.||||||||.|.|||||||||:||.|||:||||||||
Zfish   157 -----VNPDYTGPE--PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWF 214

  Fly   344 QNRRMKLKKE 353
            ||||||.||:
Zfish   215 QNRRMKWKKD 224

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	43/55 (78%)
hoxd4a	NP_001119917.1	Homeodomain	167..223	CDD:459649	43/55 (78%)