Protein Alignment Ubx and Cdx4

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001100412.1
• Gene: Cdx4 / 302400
• RGDID: 1561529
• Length: 288
• Species: Rattus norvegicus
• Alignment Length: 275
• Identity: 78/275 - (28%)
• Similarity: 116/275 - (42%)
• Gaps: 76/275 - (27%)

  Fly   114 GGGGGGGGGGAGGTGGAGNANGGNAA---------------NANGQNNPAGGMPVRPSACTPD-S 162
            |||...|.|.:||:|....|:...||               :.:|.:..|...|..|.  ..| |
  Rat    22 GGGSTAGVGTSGGSGSPLPASNFTAAPVYPHYMGYPHMSNMDPHGPSLGAWSSPYSPP--REDWS 84

  Fly   163 RVGGYLDTSGGSPVSHRGGSA----GGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAA 223
            ...|...|.|..|::....|:    ..:.|..|..|.|||..:|..:..|     |:.::....:
  Rat    85 TYPGPSSTMGTVPMNDMTSSSPAFGSPDYSTLGPTGGAGGASNGGSLPDA-----ASESLVSIDS 144

  Fly   224 QTAAASSLHQASNHTFYPWM----AIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSL 284
            .|:..::....|.|:.|.||    .:.|:     |::|                ::|
  Rat   145 GTSGGATSPSRSRHSPYAWMRKTVQVTGK-----TRTK----------------EKY-------- 180

  Fly   285 LPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 349
                          |..||.:|.||||||||.|.|:|.||:.|:|..|.|:|||:||||||||.|
  Rat   181 --------------RVVYTDHQRLELEKEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNRRAK 231

  Fly   350 LKKEIQAIKELNEQE 364
            .:|.|:  |::::.|
  Rat   232 ERKMIK--KKISQFE 244

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	33/55 (60%)
Cdx4	NP_001100412.1	Caudal_act	13..174	CDD:461413	38/163 (23%)
		Homeodomain	179..234	CDD:459649	34/76 (45%)