Protein Alignment Ubx and Hoxc12

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001100266.1
• Gene: Hoxc12 / 300262
• RGDID: 1310539
• Length: 280
• Species: Rattus norvegicus
• Alignment Length: 329
• Identity: 84/329 - (25%)
• Similarity: 120/329 - (36%)
• Gaps: 126/329 - (38%)

  Fly    40 YRGFPLSLGMSPYANHHLQRTTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIW 104
            |.|.|:||      |....||.:.:..:            |..|.|::.|
  Rat    68 YLGSPVSL------NPPFGRTCELARVE------------DSKGYYREPC--------------- 99

  Fly   105 NTGGSNGGGGG-----GGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRV 164
                :.|||||     .|...|.|.|.              |..|..|:|     |.|      :
  Rat   100 ----AEGGGGGLKREERGREPGAGPGA--------------ALLQLEPSG-----PPA------L 135

  Fly   165 GGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAAS 229
            |...|...|          ||     ||:||.|....           ..:|    .:.::.::|
  Rat   136 GFKYDYPAG----------GG-----GGDGNTGPPHD-----------PPSC----QSLESDSSS 170

  Fly   230 SLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGL 294
            ||....|         .|....||  ..:.|.|...||:|.          :|:   .|...:..
  Rat   171 SLLNEGN---------KGASAGDP--GSLVSPLNPGGGLSA----------SGA---PWYPIHSR 211

  Fly   295 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE 359
            .|:.|:.|::.|..|||.||..|.::||:||.|::..|.|:::|:||||||||||.|:.:
  Rat   212 SRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLL----- 271

  Fly   360 LNEQ 363
            |.||
  Rat   272 LREQ 275

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	28/55 (51%)
Hoxc12	NP_001100266.1	Homeodomain	213..269	CDD:459649	28/55 (51%)