Protein Alignment Ubx and Hmx3

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001099772.1
• Gene: Hmx3 / 293537
• RGDID: 1559927
• Length: 356
• Species: Rattus norvegicus
• Alignment Length: 255
• Identity: 65/255 - (25%)
• Similarity: 91/255 - (35%)
• Gaps: 75/255 - (29%)

  Fly   147 PAGGMPVRPSACTP----DSRVGGYLDTSGGSPV-----SHRG-GSAGGNVSVSGGNGNAGGVQS 201
            ||||...||.|...    ||......|.....|:     .|:. .|...:..:...:.:..|.:.
  Rat   124 PAGGHLPRPEASEKALLRDSSPASGTDRDSPDPLLKADPDHKELDSKSPDEIILEESDSEEGKKE 188

  Fly   202 GVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYG 266
            |..|.||     |..|: ||.|.|..:..           |.|.|....:.|...|
  Rat   189 GEAVPGA-----AGTTV-GATAATPGSED-----------WKAGADSPEKKPACRK--------- 227

  Fly   267 GISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHA 331
                                         ::.|..::|.|..:||..|....||:...|..:|.:
  Rat   228 -----------------------------KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAAS 263

  Fly   332 LCLTERQIKIWFQNRRMKLKKEIQA-IKELNEQEKQAQA---------QKAAAAAAAAAA 381
            |.|||.|:||||||||.|.|:::.| ::..|.....||.         :.:||..|||||
  Rat   264 LHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAA 323

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	24/55 (44%)
Hmx3	NP_001099772.1	Homeodomain	228..284	CDD:459649	24/55 (44%)