Protein Alignment Ubx and Gsx1

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001178592.1
• Gene: Gsx1 / 288457
• RGDID: 1310020
• Length: 261
• Species: Rattus norvegicus
• Alignment Length: 167
• Identity: 60/167 - (35%)
• Similarity: 79/167 - (47%)
• Gaps: 46/167 - (27%)

  Fly   218 ISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAG 282
            ::.:.|..|||::|:|.|    ||.        .||         .|:..||.|..   |..|..
  Rat   105 VAHSPAAAAAAAALYQTS----YPL--------PDP---------RQFHCISVDSS---SNQLPS 145

  Fly   283 SLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRR 347
            |            :|.|..:|..|.||||:||.:|.||:|.||||:|..|.|:|:|:||||||||
  Rat   146 S------------KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRR 198

  Fly   348 MKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQG 384
            :|.|||          .|.:..:..|.|.|...|.||
  Rat   199 VKHKKE----------GKGSNHRGGAGAGAGGGAPQG 225

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	32/55 (58%)
Gsx1	NP_001178592.1	Homeodomain	147..203	CDD:459649	32/55 (58%)