Protein Alignment Ubx and Hoxd4

DIOPT Version :9

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001099355.1
• Gene: Hoxd4 / 288153
• RGDID: 1309690
• Length: 251
• Species: Rattus norvegicus
• Alignment Length: 264
• Identity: 78/264 - (29%)
• Similarity: 102/264 - (38%)
• Gaps: 94/264 - (35%)

  Fly   115 GGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHR 179
            ||||.|.|.|....|.|....|..::.:....|.   |..|.|..|.:|.
  Rat    63 GGGGPGPGSALPARGHGQEPSGPGSHYSAPGEPC---PAPPPAPLPGARA--------------- 109

  Fly   180 GGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMA 244
                                                |:......|....::|.|.:  ..||||
  Rat   110 ------------------------------------CSQPTGPKQPPPGTALKQPA--VVYPWM- 135

  Fly   245 IAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLE 309
                       .|:.                     ..|:.|::  |.|..:|.|..|||.|.||
  Rat   136 -----------KKVH---------------------VNSVNPNY--TGGEPKRSRTAYTRQQVLE 166

  Fly   310 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAA 374
            ||||||.|.|||||||||:||.|||:||||||||||||||.||:   .|..|.:.:.:.:..:.:
  Rat   167 LEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKD---HKLPNTKGRSSSSSSSCS 228

  Fly   375 AAAA 378
            ::||
  Rat   229 SSAA 232

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeobox	299..352	CDD:395001	42/52 (81%)
Hoxd4	NP_001099355.1	Homeobox	155..209	CDD:395001	42/53 (79%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.810