Protein Alignment Ubx and Hoxd1

DIOPT Version :9

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001099354.1
• Gene: Hoxd1 / 288151
• RGDID: 1309179
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 356
• Identity: 91/356 - (25%)
• Similarity: 124/356 - (34%)
• Gaps: 154/356 - (43%)

  Fly   121 GGGAGGTGG------------------------AGNANGG-------NAANAN-----GQNNPAG 149
            |||:||.||                        .|:.:|.       .||...     ....|.|
  Rat    13 GGGSGGVGGDVLGFAPKFCRADARPVALQPAFPLGSGDGAFVSCLPLAAARPTPSPPVAPAQPPG 77

  Fly   150 GMPV--RPSACT----------PDS-----------------RVGGYLDTSGGSPVSHRGGSA-- 183
            ..|.  |.:.||          |.|                 .:|...|.||  |..|...||
  Rat    78 PQPAASRYAPCTLEGAYERGAAPASAAEYGFLGSGPAFDFPGALGRAADDSG--PHVHYATSAVF 140

  Fly   184 --GGNVSVSG--------------------GNGNAGGVQSGVGVAGAGTAWNANCTIS---GAAA 223
              ||:..:||                    .:|:.|..|                |:|   ||..
  Rat   141 SSGGSFLLSGQVDFAAFAEPGPFPACLKEPADGHPGPFQ----------------TVSPAPGACP 189

  Fly   224 QTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDW 288
            :.|:.:|...|::.|| .||.:....|:       :|.|::||..|.....|
  Rat   190 KPASPTSGLPAAHSTF-EWMKVKRNAPK-------KSKLSEYGATSPSSAIR------------- 233

  Fly   289 LGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 353
              ||         ::..|..|||||||.|.||||.||:|:|:.|.|.:.|:||||||||||.||
  Rat   234 --TN---------FSTKQLTELEKEFHFNKYLTRARRMEIANCLQLNDTQVKIWFQNRRMKQKK- 286

  Fly   354 IQAIKELNEQEKQAQAQKAAAAAAAAAAVQG 384
                       ::.:...|.||:.|:..:.|
  Rat   287 -----------REREGLLATAASVASLQLPG 306

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeobox	299..352	CDD:395001	30/52 (58%)
Hoxd1	NP_001099354.1	COG5576	<208..325	CDD:227863	47/142 (33%)
		Homeobox	233..285	CDD:278475	33/75 (44%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810