DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Dlx3

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_001099302.1 Gene:Dlx3 / 287638 RGDID:1304875 Length:287 Species:Rattus norvegicus


Alignment Length:57 Identity:27/57 - (47%)
Similarity:34/57 - (59%) Gaps:0/57 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 352
            |:.|..|:.||...|::.|....||....|.|:|..|.||:.|:||||||||.|.||
  Rat   130 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 25/55 (45%)
Dlx3NP_001099302.1 DLL_N 27..107 CDD:463567
COG5576 <109..230 CDD:227863 27/57 (47%)
Homeodomain 130..186 CDD:459649 25/55 (45%)
Blue background indicates that the domain is not in the aligned region.

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