Protein Alignment Ubx and Hoxc6

DIOPT Version :9

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: XP_038936324.1
• Gene: Hoxc6 / 252885
• RGDID: 620626
• Length: 243
• Species: Rattus norvegicus
• Alignment Length: 271
• Identity: 83/271 - (30%)
• Similarity: 117/271 - (43%)
• Gaps: 80/271 - (29%)

  Fly   146 NP------AGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVG 204
            ||      |||..|.|:..         |:::...||.|                        ..
  Rat     7 NPSLSCHLAGGQDVLPNVA---------LNSTAYDPVRH------------------------FS 38

  Fly   205 VAGAGTAWNANCTISGAAAQT----AAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQY 265
            ..||..|.|...:....:.|.    :::...:...:::||....:...|.::......::.:.|
  Rat    39 TYGAAVAQNRIYSTPFYSPQENVVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQ- 102

  Fly   266 GGISTDMGKRYSESLAGSL-LPDWL------------GTNGL-----RRRGRQTYTRYQTLELEK 312
             ..|::.|:...:....|: :..|:            |:.|:     ||||||.|:|||||||||
  Rat   103 -DFSSEQGRTAPQDQKASIQIYPWMQRMNSHSVCFVPGSLGVGYGADRRRGRQIYSRYQTLELEK 166

  Fly   313 EFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI-----------------KEL 360
            |||.|.|||||||||:|:|||||||||||||||||||.|||....                 ||.
  Rat   167 EFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEE 231

  Fly   361 NEQEKQAQAQK 371
            ..:|.:.:.||
  Rat   232 KREETEEEKQK 242

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeobox	299..352	CDD:395001	45/52 (87%)
Hoxc6	XP_038936324.1	Homeobox	153..206	CDD:395001	45/52 (87%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR45659
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.910