Protein Alignment Ubx and Gbx1

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001258382.1
• Gene: Gbx1 / 246149
• RGDID: 621864
• Length: 425
• Species: Rattus norvegicus
• Alignment Length: 375
• Identity: 97/375 - (25%)
• Similarity: 121/375 - (32%)
• Gaps: 147/375 - (39%)

  Fly   107 GGSNGGGG----GGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGG----------MPVR--- 154
            |...|.|.    ..|||..||:||:|| |.....:..:..|...|..|          ||.|
  Rat    52 GARRGPGSAMQRAAGGGAPGGSGGSGG-GPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLV 115

  Fly   155 -PSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGA-------GTA 211
             |.|..|       .....|.|......|..|.:|.:...|....|.|.|.:..|       ..|
  Rat   116 LPQALAP-------APLPAGLPPLAPLASFAGRLSNTFCAGLGQAVPSMVALTTALPSFAEPPDA 173

  Fly   212 WNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTD----- 271
            :.....::.|||  |||:|....||             ||.|.:   |:|    |.:..|
  Rat   174 YYGPPELAAAAA--AAAASTVSRSN-------------PEPPAR---RTD----GALDADELLPA 216

  Fly   272 ---------------------------MGKRYS-------------------------------- 277
                                       .||.||
  Rat   217 REKVTEPPPPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEPPAGEPAGSEPEEEGSGGDSEDSFL 281

  Fly   278 ESLAGS---------LLPDWLGT---------------NGLRRRGRQTYTRYQTLELEKEFHTNH 318
            :|.||.         .|...|||               .|..||.|..:|..|.||||||||...
  Rat   282 DSSAGGPGALLGPKPKLKGSLGTGAEEGTPVATGVTTPGGKSRRRRTAFTSEQLLELEKEFHCKK 346

  Fly   319 YLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQ 368
            ||:...|.::||||.|:|.|:||||||||.|.|:    ||..|...:..:
  Rat   347 YLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR----IKAGNVSSRSGE 392

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	32/55 (58%)
Gbx1	NP_001258382.1	Homeodomain	324..380	CDD:459649	32/55 (58%)