Protein Alignment Ubx and nob-1

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001369824.1
• Gene: nob-1 / 176641
• WormBaseID: WBGene00003779
• Length: 243
• Species: Caenorhabditis elegans
• Alignment Length: 311
• Identity: 75/311 - (24%)
• Similarity: 98/311 - (31%)
• Gaps: 114/311 - (36%)

  Fly    58 QRTTQDSPYDA--SIT-------------AACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTG 107
            |....|||.|:  |||             ||...|.|:.....:.:                 ||
 Worm     7 QMINNDSPEDSKESITSVQQTPFFWPSAAAAIPSIQGESRSERESE-----------------TG 54

  Fly   108 GSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPA-GGMPVRPSACTPDSRVGGYLDTS 171
            .|........|....|..|..|.|.:....|.......||. ......|.|.|     |.|   |
 Worm    55 SSPQLAPSSTGMVMPGTAGMYGFGPSRMPTANEFGMMMNPVYTDFYQNPLAST-----GWY---S 111

  Fly   172 GGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASN 236
            .|.|....     .|.|:...:||...:...              |.:|::|.|...:::|
 Worm   112 YGQPYQFT-----ANYSIPSLDGNLSDITIP--------------TTAGSSAATTPNAAMH---- 153

  Fly   237 HTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQT 301
               .||                        .||.|..|:                       ||.
 Worm   154 ---LPW------------------------AISHDGKKK-----------------------RQP 168

  Fly   302 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 352
            |.:.|...||.|:..|.|||.:||.|::..|.|.|:|:|:||||||||.||
 Worm   169 YKKDQISRLEYEYSVNQYLTNKRRSELSAQLMLDEKQVKVWFQNRRMKDKK 219

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	27/55 (49%)
nob-1	NP_001369824.1	Homeodomain	163..219	CDD:459649	28/78 (36%)