Protein Alignment Ubx and Hoxd11

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_032299.1
• Gene: Hoxd11 / 15431
• MGIID: 96203
• Length: 336
• Species: Mus musculus
• Alignment Length: 355
• Identity: 95/355 - (26%)
• Similarity: 125/355 - (35%)
• Gaps: 123/355 - (34%)

  Fly    43 FPLSLGMSPYANHHLQRTTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTG 107
            ||.|..::|    |:|...:.:..|..:..| ...|..|.|                       |
Mouse    45 FPYSSNLAP----HVQPVREVAFRDYGLERA-KWPYRGGGG-----------------------G 81

  Fly   108 GSNGGGGGGGGGGGGGAGG------TGGAGNANGGNAANANGQNN---PAGGMPVRPSAC--TPD 161
            |:.||||||.||||||:||      ...|..|....|..|..|.:   |||.   ||...  .|:
Mouse    82 GAGGGGGGGPGGGGGGSGGYAPYYAAAAAAAAAAAAAEEAAMQRDLLPPAGR---RPDVLFKAPE 143

  Fly   162 SRVGGYLDTSGGSPVSHRGGSAGGN-VSVSGGNG------------------------------- 194
            ...|     :.|.|  |...:|..| .|..|.||
Mouse   144 PVCG-----APGPP--HGPAAAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPQPAPAPPQ 201

  Fly   195 NAGGVQSGVGVAGAGTAWNANC--TISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSK 257
            ..|....|....|||....:.|  ...|...:.||...               .||....|
Mouse   202 PEGAADKGDPKPGAGGGGGSPCAKATPGPEPKGAAEGG---------------GGEGEGPP---- 247

  Fly   258 IRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTR 322
                           |:..:|...|::.|.      ..|:.|..||:||..|||:||..|.|:.:
Mouse   248 ---------------GEAGAEKSGGTVAPQ------RSRKKRCPYTKYQIRELEREFFFNVYINK 291

  Fly   323 RRRIEMAHALCLTERQIKIWFQNRRMKLKK 352
            .:|::::..|.||:||:||||||||||.||
Mouse   292 EKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 321

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	29/55 (53%)
Hoxd11	NP_032299.1	DUF3528	26..187	CDD:432284	48/179 (27%)
		Homeodomain	265..321	CDD:459649	29/55 (53%)