DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Hoxd1

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_034597.2 Gene:Hoxd1 / 15429 MGIID:96201 Length:328 Species:Mus musculus


Alignment Length:356 Identity:93/356 - (26%)
Similarity:127/356 - (35%) Gaps:150/356 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 SNGGGGGGGGGGGGGAG---------------------GTGGAGNANGGNAANANGQNNPAGG-- 150
            |...|||.||.||...|                     |:|.....:....|.|....:|..|  
Mouse     9 SCAAGGGSGGVGGDVLGFAPKFCRADARPVALQPAFPLGSGDGAFVSCLPLATARPTPSPPAGPA 73

  Fly   151 -MPV-RPSA-----CTPDSRVGGYLDTSGGSPVS-----------------------HRGG---- 181
             .|| :|:|     ||.:   |.|  ..|.:|.|                       ..||    
Mouse    74 QSPVPQPAAPRYAPCTLE---GAY--ERGAAPASAAEYGFLGSGPAFDFPGALGRAADEGGAHVH 133

  Fly   182 -------SAGGNVSVSG--------------------GNGNAGGVQSGVGVAGAGTAWNANCTIS 219
                   |.||:..:||                    .:|:.|..|                |:|
Mouse   134 YATSAVFSGGGSFLLSGQVDFAAFGEPGPFPACLKEPADGHPGPFQ----------------TVS 182

  Fly   220 ---GAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLA 281
               ||..:.|:.:|...|::.|| .||.:....|:       :|.|::||..|.           
Mouse   183 PAPGACPKPASPTSSLPAAHSTF-EWMKVKRNAPK-------KSKLSEYGATSP----------- 228

  Fly   282 GSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNR 346
                |..:.||         ::..|..|||||||.|.||||.||||:|:.|.|.:.|:|||||||
Mouse   229 ----PSAIRTN---------FSTKQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQVKIWFQNR 280

  Fly   347 RMKLKKEIQAIKELNEQEKQAQAQKAAAAAA 377
            |||.||          :|::.....||:.|:
Mouse   281 RMKQKK----------REREGLLATAASVAS 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 31/55 (56%)
Hoxd1NP_034597.2 PRK12323 <11..217 CDD:481241 47/234 (20%)
Antp-type hexapeptide 204..209 3/5 (60%)
Homeodomain 233..286 CDD:459649 33/61 (54%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 304..328
Blue background indicates that the domain is not in the aligned region.

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