DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Hoxc4

DIOPT Version :9

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_038581.2 Gene:Hoxc4 / 15423 MGIID:96195 Length:264 Species:Mus musculus


Alignment Length:256 Identity:79/256 - (30%)
Similarity:105/256 - (41%) Gaps:88/256 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 GAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGN 193
            |.||:.....|.| |.::|....|:    |.|             :|:|                
Mouse    74 GPGNSRAHGPAQA-GHHHPEKSQPL----CEP-------------APLS---------------- 104

  Fly   194 GNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKI 258
                      |.:.:.:.....|:.......::|||     .....||||            .||
Mouse   105 ----------GTSASPSPAPPACSQPAPDHPSSAAS-----KQPIVYPWM------------KKI 142

  Fly   259 RSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRR 323
            .        :||             :.|::.|  |..:|.|..|||.|.||||||||.|.|||||
Mouse   143 H--------VST-------------VNPNYNG--GEPKRSRTAYTRQQVLELEKEFHYNRYLTRR 184

  Fly   324 RRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQG 384
            ||||:||:|||:||||||||||||||.||:    ..|...:.::.....||.:..:||..|
Mouse   185 RRIEIAHSLCLSERQIKIWFQNRRMKWKKD----HRLPNTKVRSAPPAGAAPSTLSAATPG 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeobox 299..352 CDD:395001 42/52 (81%)
Hoxc4NP_038581.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..130 15/99 (15%)
Antp-type hexapeptide 135..140 4/16 (25%)
Homeobox 159..213 CDD:365835 42/53 (79%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..264 6/32 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.810

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