DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Gsx1

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_032204.1 Gene:Gsx1 / 14842 MGIID:95842 Length:261 Species:Mus musculus


Alignment Length:167 Identity:60/167 - (35%)
Similarity:78/167 - (46%) Gaps:46/167 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 ISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAG 282
            ::...|..|||::|:|.|    ||.        .||         .|:..||.|..   |..|..
Mouse   105 VAHGPAAAAAAAALYQTS----YPL--------PDP---------RQFHCISVDSS---SNQLPS 145

  Fly   283 SLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRR 347
            |            :|.|..:|..|.||||:||.:|.||:|.||||:|..|.|:|:|:||||||||
Mouse   146 S------------KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRR 198

  Fly   348 MKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQG 384
            :|.|||          .|.:..:..|.|.|...|.||
Mouse   199 VKHKKE----------GKGSNHRGGAGAGAGGGAPQG 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 32/55 (58%)
Gsx1NP_032204.1 SNAG domain. /evidence=ECO:0000250 1..20
Homeodomain 147..203 CDD:459649 32/55 (58%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..261 10/35 (29%)
Blue background indicates that the domain is not in the aligned region.

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