DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Hoxb2

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_598793.2 Gene:Hoxb2 / 103889 MGIID:96183 Length:354 Species:Mus musculus


Alignment Length:146 Identity:56/146 - (38%)
Similarity:71/146 - (48%) Gaps:7/146 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   240 YPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTR 304
            :|||.     .:..||...:|..:.....|:...........|..||:..|:..  ||.|..||.
Mouse    93 FPWMK-----EKKSTKKPSQSAASPSPAASSVRASEVGSPSDGPGLPECGGSGS--RRLRTAYTN 150

  Fly   305 YQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQA 369
            .|.||||||||.|.||.|.||:|:|..|.|||||:|:||||||||.|::.|..:....:.....|
Mouse   151 TQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPEGEPGGPSA 215

  Fly   370 QKAAAAAAAAAAVQGG 385
            |..|...|....|..|
Mouse   216 QDDAGEPAEEPTVSPG 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 37/55 (67%)
Hoxb2NP_598793.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..143 11/56 (20%)
Antp-type hexapeptide 92..97 2/3 (67%)
Homeodomain 142..198 CDD:459649 37/55 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 193..231 10/37 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 246..295
Blue background indicates that the domain is not in the aligned region.

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