DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Hoxa3

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_001300749.1 Gene:Hoxa3 / 103690130 RGDID:1561431 Length:444 Species:Rattus norvegicus


Alignment Length:177 Identity:65/177 - (36%)
Similarity:84/177 - (47%) Gaps:31/177 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 NANCTISGAAAQTAAASSLHQAS-NHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRY 276
            |:|.|    .|.||.:..|:..: ....:|||..:    ...||.|             ..|...
  Rat   133 NSNPT----PASTAKSPLLNSPTVGKQIFPWMKES----RQNTKQK-------------TSGSSS 176

  Fly   277 SESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKI 341
            .||.||...|....::   :|.|..||..|.:|||||||.|.||.|.||:|||:.|.||||||||
  Rat   177 GESCAGDKSPPGQASS---KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 238

  Fly   342 WFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLD 388
            ||||||||.||:.:....|.....|:.::......|      ||:|:
  Rat   239 WFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGA------GGYLN 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 38/55 (69%)
Hoxa3NP_001300749.1 COG5576 <182..309 CDD:227863 48/107 (45%)
Homeodomain 193..249 CDD:459649 38/55 (69%)
DUF4074 378..442 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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