Protein Alignment Ubx and Hoxa4

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_077326.1
• Gene: Hoxa4 / 100912525
• RGDID: 2814
• Length: 285
• Species: Rattus norvegicus
• Alignment Length: 325
• Identity: 90/325 - (27%)
• Similarity: 108/325 - (33%)
• Gaps: 130/325 - (40%)

  Fly   110 NGGGGGGGGGGGGGAGGT---------------------------------GGAGNANGG----- 136
            :||.|||.||.|||.|..                                 ||...|...
  Rat    26 HGGPGGGDGGVGGGPGYPRPQSSPHLPAPNPHAARQTPAYYAPRAREPSYHGGLYPAPAAACPYA 90

  Fly   137 --NAANANGQNNPAGGM--------PVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSG 191
              .|:.|..:.:||.|.        |..|..|.|...          :|....||||.....:..
  Rat    91 CRGASPARPEQSPAPGAHPSPAPQPPAPPRRCAPGPT----------TPAVATGGSAPACPLLLA 145

  Fly   192 GNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKS 256
            ..|.||                                  .:......||||            .
  Rat   146 DQGPAG----------------------------------PKGKEPVVYPWM------------K 164

  Fly   257 KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLT 321
            ||.                     ..::.|.:.|  |..:|.|..|||.|.||||||||.|.|||
  Rat   165 KIH---------------------VSAVNPSYNG--GEPKRSRTAYTRQQVLELEKEFHFNRYLT 206

  Fly   322 RRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGH 386
            ||||||:||.|||:|||:||||||||||.||:   .|..|.:.:.:....|.|.....|.....|
  Rat   207 RRRRIEIAHTLCLSERQVKIWFQNRRMKWKKD---HKLPNTKMRSSNPASAPAGPPGKAQTHSPH 268

  Fly   387  386
              Rat   269  268

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	42/55 (76%)
Hoxa4	NP_077326.1	Homeodomain	181..237	CDD:459649	42/55 (76%)