DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and hoxa3

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_001120901.1 Gene:hoxa3 / 100151729 XenbaseID:XB-GENE-482267 Length:406 Species:Xenopus tropicalis


Alignment Length:173 Identity:61/173 - (35%)
Similarity:85/173 - (49%) Gaps:25/173 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 TISGAAAQTAAASSLHQAS-NHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESL 280
            |.:.|.|.:..|:|:...: :...:|||           |...::...|..|.|:.     .||.
 Frog   104 TSNAATASSNKATSITSPTMSKQIFPWM-----------KESRQNTKQQKAGSSSS-----GESC 152

  Fly   281 AGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 345
            ||...|....::   :|.|..||..|.:|||||||.|.||.|.||:|||:.|.||||||||||||
 Frog   153 AGDKSPPGQSSS---KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 214

  Fly   346 RRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLD 388
            ||||.||:.:....:.....|:..:......:.     ||:|:
 Frog   215 RRMKYKKDQKGKSMMTSSGGQSPCRSPVPTPSV-----GGYLN 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 38/55 (69%)
hoxa3NP_001120901.1 Homeodomain 165..221 CDD:459649 38/55 (69%)
DUF4074 343..404 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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