DRSC/TRiP Functional Genomics Resources

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Protein Alignment modSP and pamr1b

DIOPT Version :9

Sequence 1:NP_536776.2 Gene:modSP / 42032 FlyBaseID:FBgn0051217 Length:628 Species:Drosophila melanogaster
Sequence 2:XP_009296508.1 Gene:pamr1b / 100330319 ZFINID:ZDB-GENE-100422-12 Length:1097 Species:Danio rerio


Alignment Length:516 Identity:122/516 - (23%)
Similarity:185/516 - (35%) Gaps:152/516 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 PLLCNTTKKVTTPVVTETPL------------ELLGCPLPLGDERPILTGDGSRVLTGPITRGTV 252
            |.|....:.|.|..|.:.|.            |:..||.|    .|:..|...||  ..:...|:
Zfish   630 PALQEDPQHVETADVQQEPTAESPPTAQNEAGEVTPCPPP----PPLYHGFSERV--SGVRPETL 688

  Fly   253 RFSCKQGYVLEGEESSYC-AKNKWSTSTIPKCVKYCSTAGEFDGYSTKALCTHNGQQVECRK-PF 315
            ||.|.|.|.|.|.:...| |...||.:. |.|::.|...........|.|..|    |..|| |.
Zfish   689 RFFCNQSYALVGSDRRTCQADGSWSGAQ-PVCIRACREPKVSVLVRQKVLPPH----VPSRKTPV 748

  Fly   316 H---------------------------PPG-----TEVKFVCSTGFKTLSPLPEMRCMKGGYWN 348
            |                           |.|     |.:::.|::.:...|......|:|.|.|:
Zfish   749 HKFYSSSVSTVFLKDVRATQSPLSLPTLPQGFHHLYTHIEYECASQYYQHSGSSRRTCLKMGKWS 813

  Fly   349 RGRQRCEQDCGQLAT--PIKQFSSGGYTINNTVVPWHVGLY--------VWHNEKD--------- 394
            .....|...||:|::  |.|.        ..|..||...:|        :...::|         
Zfish   814 GRHVSCSPVCGKLSSFDPQKP--------EQTQWPWLASIYRRPAGKLKLKSGKEDQAEDQAEDG 870

  Fly   395 YHFQCGGSLLTPDLVITAAHCVYDEGTRLPYSYDTFRVIAAKFYRNYGETTPEEKR-----RDVR 454
            :...|.|:|:....|:.|||||.:.|...|....|.||...|.||:       |:|     :.||
Zfish   871 WQLVCSGALVNQRSVVVAAHCVTELGKTHPLDPHTLRVTLGKHYRS-------ERRHTKGLQTVR 928

  Fly   455 LIEIA--PGYKGRTENYYQDLALLTLDEPFELSHVIRPICVTFASFAEKESVTDDVQGKFAGWNI 517
            :..||  |.:.....:  .|:|:|.|.:...:...:.|:|:      ....:|.| ||...||::
Zfish   929 VSSIALHPTFDPLVLD--SDVAVLKLLDKARIGEHVVPVCL------PDPQLTAD-QGLVTGWSL 984

  Fly   518 EN---------------------KHELQF----VPAVSKSNSVCRRNLRDIQADKFCIFTQGKSL 557
            |.                     :.|.|:    :|.....|.:|.|     ||:        :|.
Zfish   985 EPDPADADGERARVGHVLMGDTVQCEQQYASHGLPISVSENMLCGR-----QAE--------RSN 1036

  Fly   558 ACQGDSGGGFTSELPTNAFSTWNTARHF-LFGVISNAPNADQCAHSL-TVMTNIQHFEDMI 616
            .|..|:||...|  |..:.   :|.:|: |.|::|....:..|:..| ||.|:|.:|...|
Zfish  1037 ICPADTGGILLS--PAGSA---HTPQHWTLLGLVSFGFESSVCSSELYTVYTHIANFVSFI 1092

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
modSPNP_536776.2 LDLa 27..58 CDD:197566
LDLa 70..101 CDD:197566
LDLa 123..157 CDD:197566
LDLa 167..199 CDD:238060
CCP <251..284 CDD:153056 13/33 (39%)
Sushi 309..354 CDD:278512 14/77 (18%)
Tryp_SPc 371..616 CDD:214473 69/295 (23%)
Tryp_SPc 371..591 CDD:304450 61/269 (23%)
pamr1bXP_009296508.1 CUB 138..244 CDD:238001
EGF_CA 248..282 CDD:238011
CCP 287..341 CDD:153056
CCP 346..402 CDD:153056
Sushi <686..719 CDD:278512 13/33 (39%)
Tryp_SPc 838..1095 CDD:238113 69/289 (24%)
Tryp_SPc 838..1092 CDD:214473 68/287 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D140743at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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