DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT3 and Hspd1

DIOPT Version :9

Sequence 1:NP_001189236.1 Gene:CCT3 / 42029 FlyBaseID:FBgn0015019 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_071565.2 Gene:Hspd1 / 63868 RGDID:621314 Length:573 Species:Rattus norvegicus


Alignment Length:573 Identity:135/573 - (23%)
Similarity:223/573 - (38%) Gaps:109/573 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 IQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREITV----QHPAAKSMIEIARTQ 88
            :|....:||.:...:||:....::....|...:|.||..:.:.|.:    ::..||.:.::|...
  Rat    41 LQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNT 105

  Fly    89 DEEVGDGTTSVIVLAGEMLAAAEPF--LQQQIHPTVIIRAYREALEDIVGHLQSQLSIQLDVKDK 151
            :||.|||||:..|||..:  |.|.|  :.:..:|..|.|....|::.::..|:.|.......::.
  Rat   106 NEEAGDGTTTATVLARSI--AKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEI 168

  Fly   152 AKMADVVKACVGTKFIGK-WSDLAVKIALDAVETV----TLSENGRLEV---------------- 195
            |::|.:  :..|.|.||. .||...|:....|.||    ||  |..||:                
  Rat   169 AQVATI--SANGDKDIGNIISDAMKKVGRKGVITVKDGKTL--NDELEIIEGMKFDRGYISPYFI 229

  Fly   196 -----------------DIKRYAKVEKI-PGGAIEESCVLKGVMINKDVTHPKMRRLIENPRIVL 242
                             ..|:.:.|:.| |...|..:.....|:|.:||....:..|:.|     
  Rat   230 NTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLN----- 289

  Fly   243 LDCSLEYKKGESQTNVEIIGEQDFTRMLQIEEEFVQRICADIIAVKPDLVFTEKGVS----DLAQ 303
                 ..|.|.....|:..|..| .|..|::         |:.......||.|:|::    |:..
  Rat   290 -----RLKVGLQVVAVKAPGFGD-NRKNQLK---------DMAIATGGAVFGEEGLNLNLEDVQA 339

  Fly   304 HYLLKAGITAIRRLRKTDNLRIARACG--ATIVNRTEELTEK-DVGTGAGLFEVKKIGDEYFTFV 365
            |.|.|.|...:.:    |:..:.:..|  |.|..|.:|:||: |:.|..  :|.:|:.:..    
  Rat   340 HDLGKVGEVIVTK----DDAMLLKGKGDKAHIEKRIQEITEQLDITTSE--YEKEKLNERL---- 394

  Fly   366 TECKEPKACTILLRGASKDI-LNETERNLQDALHVARNLVLEPRLVAGGGAVEMAASQLL----- 424
              .|......:|..|.:.|: :||.:..:.|||:..|..| |..:|.|||...:.....|     
  Rat   395 --AKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAV-EEGIVLGGGCALLRCIPALDSLKP 456

  Fly   425 TRKQVKGPYTAVAHALEIIPRTLAQNCGANTIRALTALRAKHASHTGDGVCAWGIDGESGEIVDM 489
            ..:..|.....:..||:|...|:|:|.|..     .:|..:....:...|   |.|...|:.|:|
  Rat   457 ANEDQKIGIEIIKRALKIPAMTIAKNAGVE-----GSLIVEKILQSSSEV---GYDAMLGDFVNM 513

  Fly   490 NVKNIWEPLAVKLQTYKTAVETAILLLRIDDIVSGSKKRGGNEPTNPAAMAQG 542
            ..|.|.:|..|.......|...|.||...:.:|:...|    |..:|...|.|
  Rat   514 VEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPK----EEKDPGMGAMG 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT3NP_001189236.1 chap_CCT_gamma 7..528 CDD:274085 130/557 (23%)
TCP1_gamma 7..524 CDD:239453 130/553 (24%)
Hspd1NP_071565.2 GroEL 28..548 CDD:239460 130/553 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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