DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT3 and cct4

DIOPT Version :9

Sequence 1:NP_001189236.1 Gene:CCT3 / 42029 FlyBaseID:FBgn0015019 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_012818347.1 Gene:cct4 / 448604 XenbaseID:XB-GENE-974483 Length:561 Species:Xenopus tropicalis


Alignment Length:504 Identity:155/504 - (30%)
Similarity:267/504 - (52%) Gaps:19/504 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 RESGRKVQLENIQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREITVQHPAAKSM 81
            |:...:::..||.||||:||.:||.|||:.|.||:.|..|.:.:||||..||:.:.|.|||||.:
 Frog    30 RDKPAQIRFSNISAGKAVADAVRTSLGPKGMDKMIQDGKGDVTITNDGATILKLMQVLHPAAKML 94

  Fly    82 IEIARTQDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYREALEDIVGHLQSQLSIQL 146
            :|:::.||.|.|||||||:|:||.:|.|....||:.||||.|..:::.|.:..: .:.:.:|..:
 Frog    95 VELSKAQDIEAGDGTTSVVVIAGALLDACAKLLQKGIHPTTISESFQLASDKGI-EVLTNMSQSV 158

  Fly   147 DVKDKAKMADVVKACVGTKFIGKWSDLAVKIALDAVETVTLSENGRLEVDIKRYAKVEKIPGGAI 211
            ::.|:..:.:.....:.:|.:.::|.|...:::|||..|...:... .||::....|:|: ||.|
 Frog   159 ELSDRETLLNSATTSLNSKVVSQYSSLLAPMSVDAVMKVIDPQTAN-SVDLRDIKIVKKL-GGTI 221

  Fly   212 EESCVLKGVMINKDVTHPKMRRLIENPRIVLLDCSLEYKKGESQTNVEIIGEQDFTRMLQIEEEF 276
            ::..::.|:::.:...:..:.| :|..:|.|:...|...|.:....:.:.......|:|:.|..:
 Frog   222 DDCEMVDGLVLTQKAANTGVTR-VEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERTY 285

  Fly   277 VQRICADIIAVKPDLVFTEKGV-----SDLAQHYLLKAGITAIRRLRKTDNLRIARACGATIVNR 336
            :..:...|.....:::..:|.:     ||||.|:|.|..|..::.:.:.|...|.:..|...|..
 Frog   286 ILNLVKQIKKAGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAH 350

  Fly   337 TEELTEKDVGTGAGLFEVKKIGDEYFTFVTECKEP-KACTILLRGASKDILNETERNLQDALHVA 400
            .::.|...:.:.....||...|......:|.|..| |..||::||::|.::.|.||::.|||.|.
 Frog   351 IDQFTADMLASAELAEEVSLNGSGKLVKITGCANPGKTVTIVVRGSNKLVIEEAERSIHDALCVI 415

  Fly   401 RNLVLEPRLVAGGGAVEMAASQLLTR--KQVKGPYT----AVAHALEIIPRTLAQNCGANTIRAL 459
            |.||.:..|:|||||.|:..|..|..  :.:.|..:    |.|.||||||.|||:|.|.|.|..:
 Frog   416 RCLVKKRALIAGGGAPEIELSLRLNEYARTLSGMESYCIRAFADALEIIPFTLAENAGLNPISTV 480

  Fly   460 TALRAKHASHTGDGVCAWGIDGESGEIVDMNVKNIWEPLAVKLQTYKTA 508
            |.||.:||.  |:......:......|.|.::..::..|.:|: |:.:|
 Frog   481 TELRNRHAQ--GEKTAGINVRKVKSSIPDCSLLYMFCFLLLKI-TFTSA 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT3NP_001189236.1 chap_CCT_gamma 7..528 CDD:274085 155/504 (31%)
TCP1_gamma 7..524 CDD:239453 155/504 (31%)
cct4XP_012818347.1 TCP1_delta 28..500 CDD:239454 149/475 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D207515at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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