DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT3 and cct6a

DIOPT Version :9

Sequence 1:NP_001189236.1 Gene:CCT3 / 42029 FlyBaseID:FBgn0015019 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001001208.1 Gene:cct6a / 407866 XenbaseID:XB-GENE-987462 Length:531 Species:Xenopus tropicalis


Alignment Length:534 Identity:149/534 - (27%)
Similarity:281/534 - (52%) Gaps:36/534 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VLSQNTKRESGR--KVQLENIQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREIT 72
            |.:.|.|.|..|  .....||.|.:.:.||:||.|||:..:|||:...|.|.:|.|||.:|.|:.
 Frog     4 VKALNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQ 68

  Fly    73 VQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYR----EALED 133
            :|||.|..:.::|..||:..||||||.:::.||:|..|:.::.:.:||.::...:.    :||| 
 Frog    69 IQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIVTEGFEAAKVKALE- 132

  Fly   134 IVGHLQSQLSIQLDVKDKAKMADVVKACVGTKFIGKWSDLAVKIALDAVETVTLSENGRLEVDIK 198
                :..|:.:..:: |:..:.:|.:..:.||...:.:|:..:..:|:|..:.....   .:|: 
 Frog   133 ----VLEQVKVSKEM-DRETLINVARTSLRTKVHAELADILTEAVVDSVLAIRQPNE---PIDL- 188

  Fly   199 RYAKVEKIPGGAIEESCVLKGVMINKDVTHPKMRRLIENPRIVLLDCSLEYKKGESQTNVEIIGE 263
            ...::.::......::.:::|::::....||.|::.:|:..|:..:.||||:|.|..:.......
 Frog   189 YMVEIMEMKHKTESDTTLIRGLVLDHGARHPDMKKRVEDAFILTCNVSLEYEKTEVNSGFFYKSA 253

  Fly   264 QDFTRMLQIEEEFVQRICADIIAVKPD---------LVFTEKGVSDLAQHYLLKAGITAIRRLRK 319
            .:..::::.|.:|::.....|||:|..         :|..:||:...:...|.|.||.|:||.::
 Frog   254 DEREKLVKAERKFIEERVNKIIALKQKMCGDTGKGFIVINQKGIDPFSLDALAKEGIVALRRAKR 318

  Fly   320 TDNLRIARACGATIVNRTEELTEKDVGTGAGLFEVKKIGDEYFTFVTECKEPKACTILLRGASKD 384
            .:..|:..|||...:|..::||.:.:| .|||.....:|:|.|||:.:|:.|::.|:|::|.:|.
 Frog   319 RNMERLTLACGGNAMNSVDDLTPECLG-HAGLVYEYTLGEEKFTFIEQCENPRSVTLLIKGPNKH 382

  Fly   385 ILNETERNLQDALHVARNLVLEPRLVAGGGAVEMAASQLLTRKQ--VKG----PYTAVAHALEII 443
            .:.:.:..::|.|...:|.:.:..:|.|.||:|:|.:..|.:.:  |||    ...|.|.||.||
 Frog   383 TITQIKDAIRDGLRAVKNAIEDCSVVPGAGALEVAIADALVKHKPNVKGRAQLGVQAFADALLII 447

  Fly   444 PRTLAQNCGANTIRALTALRAKHASHTGDGVCAWGIDGESGEIVDMNVKNIWEPLAVKLQTYKTA 508
            |:.||||.|.:....|..|:.::|    |.....|:|..:||.:..:...||:..:||.|...:.
 Frog   448 PKVLAQNSGYDPQETLVKLQTEYA----DSSQLIGVDLNTGEPMISSEAGIWDNYSVKKQLLHSC 508

  Fly   509 VETAILLLRIDDIV 522
            ...|..:|.:|:|:
 Frog   509 TVIASNILLVDEIM 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT3NP_001189236.1 chap_CCT_gamma 7..528 CDD:274085 149/534 (28%)
TCP1_gamma 7..524 CDD:239453 149/534 (28%)
cct6aNP_001001208.1 TCP1_zeta 7..526 CDD:239458 148/531 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D207515at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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