DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT3 and tcp1

DIOPT Version :9

Sequence 1:NP_001189236.1 Gene:CCT3 / 42029 FlyBaseID:FBgn0015019 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_571305.1 Gene:tcp1 / 30477 ZFINID:ZDB-GENE-990714-24 Length:556 Species:Danio rerio


Alignment Length:565 Identity:182/565 - (32%)
Similarity:294/565 - (52%) Gaps:46/565 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PILVLSQNTKRESGRKVQLENIQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREI 71
            |:.||.|.|   :|..|:.:|:.|..:||:::::.|||..:.|||:|.:|.:.:||||..||:.:
Zfish     5 PLSVLGQRT---TGESVRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLL 66

  Fly    72 TVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYREALEDIVG 136
            .|:|||||.:.|:|..||:|||||||||:::|.|:|.:|:..::|:||||.||..||.|.::.|.
Zfish    67 EVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKSADELVKQKIHPTSIISGYRLACKEAVR 131

  Fly   137 HLQSQLSIQLDVKDKAKMADVVKACVGTKFIGKWSDLAVKIALDAVETVTLSENGRLEVDIKRY- 200
            ::...|:|..|...:..:.:..|..:.:|.||..::....:.:||...|...: |:   .:.|| 
Zfish   132 YINENLTIGTDDLGRECLLNAAKTSMSSKIIGVDAEFFANMVVDAAVAVKFVD-GK---GVARYP 192

  Fly   201 ---AKVEKIPGGAIEESCVLKGVMINKDVTHPKMRRLIENPRIVLLDCSLEYKKGESQTNVEIIG 262
               ..|.|..|.:.:||.::.|..:|..|....|.:.:.|.:|..||.||:..|.:....|.|..
Zfish   193 INSVNVLKAHGRSQKESFLVNGYALNCTVGSQGMVKRVANAKIACLDFSLQKTKMKLGVQVVIND 257

  Fly   263 EQDFTRMLQIEEEFVQRICADIIAVKPDLVFTEKGVSDLAQHYLLKAGITAIRRLRKTDNLRIAR 327
            .:...::.|.|.:..:.....|:|...::|.|..|:.|:...|.:..|..|:||:.|.|..|||:
Zfish   258 PEKLDQIRQRESDITKERVQKILASGANVVLTTGGIDDMCLKYFVDVGAMAVRRVLKKDLKRIAK 322

  Fly   328 ACGATIVNRTEELTEKDVGTGAGLFEVKKIG-----------DEYFTFVTECKEPKACTILLRGA 381
            |.|||:.:....|      .|...||...:|           |:....:...|...:.:|:||||
Zfish   323 ATGATVCSSLSNL------EGEETFEPSMLGQAEEVVQERVCDDELILIKNTKARTSASIILRGA 381

  Fly   382 SKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEMA--------ASQLLTRKQVKGPYTAVAH 438
            :..:.:|.||:|.|||.|.:.::....:|.||||||.|        |:.:.:|:|:  .....|.
Zfish   382 NDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQL--AIAEFAR 444

  Fly   439 ALEIIPRTLAQNCGANTIRALTALRAKH--ASHTGDGV-CAW-GIDGESGEIVDMNVKNIWEPLA 499
            :|.:||:|||.|...::...:..|||.|  |....|.. ..| |:|..:|:..|.....::||..
Zfish   445 SLLVIPKTLAVNAAQDSTDLVAKLRAFHNEAQVNPDRKNLKWIGLDLVNGKPRDNKQAGVYEPTM 509

  Fly   500 VKLQTYKTAVETAILLLRIDDIVS--GSKKRGGNEPTNPAAMAQG 542
            ||.::.|.|.|.||.:|||||::.  ..:|.||  |:...|:..|
Zfish   510 VKTKSLKFATEAAITILRIDDLIKLFPDQKEGG--PSYQDAVQSG 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT3NP_001189236.1 chap_CCT_gamma 7..528 CDD:274085 176/549 (32%)
TCP1_gamma 7..524 CDD:239453 176/545 (32%)
tcp1NP_571305.1 chap_CCT_alpha 6..541 CDD:274081 176/549 (32%)
TCP1_alpha 10..536 CDD:239451 173/540 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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