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Protein Alignment CCT3 and Cct4

DIOPT Version :9

Sequence 1:	NP_001189236.1	Gene:	CCT3 / 42029	FlyBaseID:	FBgn0015019	Length:	544	Species:	Drosophila melanogaster
Sequence 2:	NP_877966.1	Gene:	Cct4 / 29374	RGDID:	727937	Length:	539	Species:	Rattus norvegicus

Alignment Length:	519	Identity:	162/519 - (31%)
Similarity:	283/519 - (54%)	Gaps:	20/519 - (3%)

- Green bases have known domain annotations that are detailed below.

  Fly    17 RESGRKVQLENIQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREITVQHPAAKSM 81
            |:...:::..||.|.||:||.|||.|||:.|.||:.|..|.:.:||||..||:::.|.||||:.:
  Rat    27 RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARML 91

  Fly    82 IEIARTQDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYREALEDIVGHLQSQLSIQL 146
            :|:::.||.|.|||||||:::||.:|.:....||:.||||:|..::::|||..: .:.:.:|..:
  Rat    92 VELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGL-EILTDMSRPV 155

  Fly   147 DVKDKAKMADVVKACVGTKFIGKWSDLAVKIALDAVETVTLSENGRLEVDIKRYAKVEKIPGGAI 211
            .:.|:..:.:.....:.:|.:.::|.|...::::||..| :.......||::....|:|: ||.|
  Rat   156 QLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV-IDPATATSVDLRDIKIVKKL-GGTI 218

  Fly   212 EESCVLKGVMINKDVTHPKMRRLIENPRIVLLDCSLEYKKGESQTNVEIIGEQDFTRMLQIEEEF 276
            ::..:::|:::.:.|.:..:.| :|..:|.|:...|...|.:....:.:.......|:|:.|..:
  Rat   219 DDCELVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAY 282

  Fly   277 VQRICADIIAVKPDLVFTEKGV-----SDLAQHYLLKAGITAIRRLRKTDNLRIARACGATIVNR 336
            :..:...|.....:::..:|.:     ||||.|:|.|..|..::.:.:.|...|.:..|...|..
  Rat   283 ILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAH 347

  Fly   337 TEELTEKDVGTGAGLFEVKKIGDEYFTFVTECKEP-KACTILLRGASKDILNETERNLQDALHVA 400
            .::.|...:|:.....||...|......:|.|..| |..||::||::|.::.|.||::.|||.|.
  Rat   348 IDQFTPDMLGSAELAEEVSLNGSGKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVI 412

  Fly   401 RNLVLEPRLVAGGGAVEMAASQLLTR--KQVKGPYT----AVAHALEIIPRTLAQNCGANTIRAL 459
            |.||.:..|:|||||.|:..:..||.  :.:.|..:    |.|.|:|:||.|||:|.|.|.|..:
  Rat   413 RCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTV 477

  Fly   460 TALRAKHASHTGDGVCAWGIDGESGEIVDMNVKNIWEPLAVKLQTYKTAVETAILLLRIDDIVS 523
            |.||.:||    .|....||:...|.|.::..:.:.:||.|.:.....|.||...:|:|||:|:
  Rat   478 TELRNRHA----QGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.