DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT3 and hspd1

DIOPT Version :9

Sequence 1:NP_001189236.1 Gene:CCT3 / 42029 FlyBaseID:FBgn0015019 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_851847.1 Gene:hspd1 / 282676 ZFINID:ZDB-GENE-021206-1 Length:575 Species:Danio rerio


Alignment Length:576 Identity:123/576 - (21%)
Similarity:209/576 - (36%) Gaps:129/576 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 IQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREITV----QHPAAKSMIEIARTQ 88
            :|....:||.:...:||:....::....|...:|.||..:.:.|.:    ::..||.:.::|...
Zfish    41 LQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDRYKNIGAKLVQDVANNT 105

  Fly    89 DEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYREALEDIVGHLQ-------------- 139
            :||.|||||:..|||..:.......:.:..:|..|.|....|:|:::..|:              
Zfish   106 NEEAGDGTTTATVLARAVAKEGFDTISKGANPVEIRRGVMMAVEEVISELKKNSKPVTTPEEIAQ 170

  Fly   140 -SQLSIQLD---------------------VKDKAKMADVVKACVGTKF-IGKWSDLAVKIA--- 178
             :.:|...|                     |||...:.|.::...|.|| .|..|...:..|   
Zfish   171 VATISANGDTEVGNIISNAMKKVGRKGVITVKDGKTLHDELEIIEGMKFDRGYISPYFINTAKGQ 235

  Fly   179 ----LDAVETVTLSENGRLEVDIKRYAKVEKI-PGGAIEESCVLKGVMINKDVTHPKMRRLIENP 238
                .||.  |.|||        |:.:.|:.| |...|........|::.:||....:..|:.| 
Zfish   236 KCEFQDAY--VLLSE--------KKISSVQSIVPALEIANQHRKPLVIVAEDVDGEALSTLVLN- 289

  Fly   239 RIVLLDCSLEYKKGESQTNVEIIGEQDFTRMLQIEEEFVQRICADIIAVKPDLVFTEK----GVS 299
                     ..|.|.....|:..|..| .|..|::         |:.......||.::    .:.
Zfish   290 ---------RLKVGLQVVAVKAPGFGD-NRKNQLQ---------DMAVSTGGTVFGDEAMGLALE 335

  Fly   300 DLAQHYLLKAGITAIRRLRKTDNLRI-ARACGATIVNRTEELTEKDVGTGAGLFEVKKIGDEYFT 363
            |:..|...|.|...:   .|.|.:.: .|...:.|..|..|:.|:...|.:. :|.:|:.:..  
Zfish   336 DIQAHDFGKVGEVIV---TKDDTMLLKGRGDASAIEKRVNEIAEQLESTNSD-YEKEKLNERL-- 394

  Fly   364 FVTECKEPKACTILLRGASKDI-LNETERNLQDALHVARNLVLEPRLVAGGGAVEMAASQLLTRK 427
                .|......::..|.:.|: :||.:..:.|||:..|..| |..:|.|||...:.....|  .
Zfish   395 ----AKLSDGVAVIKVGGTSDVEVNEKKDRVTDALNATRAAV-EEGIVPGGGCALLRCIPAL--D 452

  Fly   428 QVKGPYTA--------VAHALEIIPRTLAQNCGA-------NTIRALTALRAKHASHTGDGVCAW 477
            .:| |..|        :..:|.|...|:|:|.|.       ..:::.|.:               
Zfish   453 NIK-PANADQKIGIDIIRRSLRIPAMTIAKNAGVEGSLVVEKILQSSTEI--------------- 501

  Fly   478 GIDGESGEIVDMNVKNIWEPLAVKLQTYKTAVETAILLLRIDDIVSGSKKRGGNEP 533
            |.|..:||.|:|..:.|.:|..|.......|...|.||...:.:|:...|.....|
Zfish   502 GYDAMNGEYVNMVERGIIDPTKVVRTALLDAAGVASLLSTAEAVVTEIPKEEKEMP 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT3NP_001189236.1 chap_CCT_gamma 7..528 CDD:274085 121/569 (21%)
TCP1_gamma 7..524 CDD:239453 121/565 (21%)
hspd1NP_851847.1 PTZ00114 24..558 CDD:185455 123/576 (21%)
GroEL 28..548 CDD:239460 121/565 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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