DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl6IP1 and Retreg2

DIOPT Version :10

Sequence 1:NP_650570.1 Gene:Arl6IP1 / 42027 FlyBaseID:FBgn0038453 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_001094230.1 Gene:Retreg2 / 363252 RGDID:1306844 Length:541 Species:Rattus norvegicus


Alignment Length:185 Identity:31/185 - (16%)
Similarity:70/185 - (37%) Gaps:22/185 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LEPFRTAIVGAYGVLTWEKQYYAGVVFGVISCLYLVLWYLDLSLITLLSLLGVISILLNYAFPMV 83
            |..:...:..|..:|.|||..::.|....::.|:   |.|..|.:....||. ||:|..:...:.
  Rat    55 LRGWEAVLAAAQRLLVWEKPLHSLVTAATLNGLF---WLLSSSSLRPFFLLS-ISLLTYFLLDLW 115

  Fly    84 SRLIFGGVNWDGDQEAKFE----------------DVCGQVCAVKGSLVVWYEYL--FNERKSTV 130
            .......|:....:|...:                ::|..:.....:..:..:.|  :..:....
  Rat   116 HPRFLPDVSAPPPEEPHSDSEGAGSGAQPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQ 180

  Fly   131 FVIVMSLGLLAMAWIGAIINNLLLMYLATLLILMWPGLQNKDIFKAITQRASKII 185
            |...:..|...:|.:|..:..:::.|:..|.||:||.:...::.:.:..|...::
  Rat   181 FCARVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYTRLEPLL 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl6IP1NP_650570.1 Arl6IP1_RETR3-like 30..194 CDD:425403 29/174 (17%)
Retreg2NP_001094230.1 RETR2_RHD 46..244 CDD:411700 31/185 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 249..282
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 331..389
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 403..440
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 459..481
LIR motif. /evidence=ECO:0000250|UniProtKB:Q9H6L5 485..490
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 496..541
Blue background indicates that the domain is not in the aligned region.

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