DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nonA-l and ML4

DIOPT Version :9

Sequence 1:NP_001262646.1 Gene:nonA-l / 42026 FlyBaseID:FBgn0015520 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_196346.1 Gene:ML4 / 830620 AraportID:AT5G07290 Length:907 Species:Arabidopsis thaliana


Alignment Length:402 Identity:96/402 - (23%)
Similarity:151/402 - (37%) Gaps:85/402 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 VANNSH-QKQINESPKPAAGNVPAKNNELSAGG--GGQNQPNHSNKGQGNQ-GDQGEQGNQGPNF 162
            |...|| .:.|..:|:...|.:  |||.:..||  ...|.|..|......| ..|.......|:|
plant    11 VPTPSHFHEDIRITPEKQFGFM--KNNPMPEGGVDRSSNLPTSSWTSDSYQLSQQSSLSGALPSF 73

  Fly   163 --RGR-------------------------------------GGGPNQPNQNANQEQSNGYPGNQ 188
              .||                                     .....:|:::..:.::... ||.
plant    74 IPNGRTTTNDTHWESSLFSSSLSDLFSRKLRLPRSDKLAFMSANREEEPSESLEEMEAQTI-GNL 137

  Fly   189 GDNKGGQGQRGAGGGKHQRGNRSRRSGGSGI----MNSSMGGGGQRGEDF-FIAQRLLDISGPTH 248
            ..::........|.|.|    :||.:||..:    :.||:||....|:.| .::||  |....::
plant   138 LPDEDDLFAEVVGEGVH----KSRANGGDDLDDCDLFSSVGGMELDGDVFSSVSQR--DGKRGSN 196

  Fly   249 ELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYY--Q 311
            .....|.| ..:.:.| .|:|.|:.|...|.:|..:||.:|::..:.: ..||..|:.:.||  :
plant   197 VSTVAEHP-QGEILSR-ILFVRNVDSSIEDCELGVLFKQFGDVRALHT-AGKNRGFIMVSYYDIR 258

  Fly   312 NAEKAKRALDGSLRKGRVLRVRF----------APNAIVRVTNLNQFVSNELLHQSFEIFGPIER 366
            .|:||.|||.|.|.:||.|.:|:          :....:.|.||:..:|||.||..|..:|.|..
plant   259 AAQKAARALHGRLLRGRKLDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIRE 323

  Fly   367 AVICVDDRGKHTGEGI-VEFAKKSSASACLRLCNE-KCFFLTASLRPCLVE-----PMEVNNDND 424
            .     .|..|....: :||.....|...|:..|. :.......|.|...|     |...::|.:
plant   324 V-----RRTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKLAPTCPEGTSFWPQFASDDGE 383

  Fly   425 -GLPDKTLNKKS 435
             |||....|..|
plant   384 GGLPKMAFNNLS 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonA-lNP_001262646.1 RRM1_p54nrb_like 264..334 CDD:240778 26/71 (37%)
RRM2_p54nrb_like 339..418 CDD:240779 22/85 (26%)
NOPS_NONA_like 409..508 CDD:240580 10/33 (30%)
OmpH <479..578 CDD:281871
DUF4472 479..559 CDD:291409
ML4NP_196346.1 RRM1_MEI2_like 210..286 CDD:240968 27/77 (35%)
RRM2_MEI2_EAR1_like 295..364 CDD:240722 18/73 (25%)
RRM 655..898 CDD:223796
RRM_2 741..837 CDD:112856
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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