DRSC/TRiP Functional Genomics Resources

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Protein Alignment nonA-l and FPA

DIOPT Version :10

Sequence 1:NP_536740.1 Gene:nonA-l / 42026 FlyBaseID:FBgn0015520 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_001078046.1 Gene:FPA / 818942 AraportID:AT2G43410 Length:901 Species:Arabidopsis thaliana


Alignment Length:429 Identity:90/429 - (20%)
Similarity:155/429 - (36%) Gaps:127/429 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 NRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEK---AKRALDGSLRK 326
            |.|:||:||.:||:.||.|:|..||:|..|.....:.|.|:   ||::.|:   ||.||.|:...
plant    18 NNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFI---YYRHVEEAVAAKEALQGANLN 79

  Fly   327 GRVLRVRFA----PNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAK 387
            |..:::.:|    |...:.|..:...||.:.|.:.|..||.||                  :|  
plant    80 GSQIKIEYARPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIE------------------DF-- 124

  Fly   388 KSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKS-----LEFRHERSVGPR 447
                    |...|:        :...::..|:   :|.|..|::|.|.     |.....||..|:
plant   125 --------RFLRER--------KTAFIDYYEM---DDALQAKSMNGKPMGGSFLRVDFLRSQAPK 170

  Fly   448 ---FACLNSFEHEYGS-----RWKQLHDLFKSKQDSLK--------------------------- 477
               :|  .|:::..|:     ::...::.||......|                           
plant   171 KEQWA--GSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFG 233

  Fly   478 --RELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMH 540
              ..:|....:..|.:|: |..:|....::.|:.|..:|.|:|:.:...|...|:........|.
plant   234 EIERVKSYPSRNFALVEF-RSAEEARQCKEGLQGRLFNNPRIKIMYSNDELPPEQDDTSFYSGMK 297

  Fly   541 RYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSN----SGFEHFDSPFEVFGNNSN 601
            |.:..:..::....:......:....:.|.          |:|    :|.|:.|    |.|...|
plant   298 RSRTDMFNNDPSFVSSPHSTGIPGSMRPLR----------GTNERSYNGAEYND----VVGKEPN 348

  Fly   602 ------NST-----MAGPG-GPDNSDGNQ---HGHIDSW 625
                  |.|     ..||| .|..:.|.:   ..:.|||
plant   349 WRRPSANGTGILPSPTGPGILPSPAQGTRRPMRSNPDSW 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonA-lNP_536740.1 PRK12678 3..>219 CDD:237171
Med15 <90..>191 CDD:312941
RRM1_p54nrb_like 264..334 CDD:409769 27/71 (38%)
RRM2_p54nrb_like 339..418 CDD:409770 12/78 (15%)
NOPS_NONA_like 409..508 CDD:240580 21/140 (15%)
APG6_N <477..555 CDD:465452 15/106 (14%)
FPANP_001078046.1 RRM_SF 17..88 CDD:473069 27/72 (38%)
PABP-1234 19..383 CDD:130689 86/422 (20%)
SPOC_SF 440..559 CDD:439200
DUF5585 <594..>858 CDD:465521
Blue background indicates that the domain is not in the aligned region.

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