DRSC/TRiP Functional Genomics Resources

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Protein Alignment nonA-l and rbm15

DIOPT Version :10

Sequence 1:NP_536740.1 Gene:nonA-l / 42026 FlyBaseID:FBgn0015520 Length:630 Species:Drosophila melanogaster
Sequence 2:XP_001335820.1 Gene:rbm15 / 798517 ZFINID:ZDB-GENE-041008-192 Length:853 Species:Danio rerio


Alignment Length:642 Identity:119/642 - (18%)
Similarity:206/642 - (32%) Gaps:226/642 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 NPAEKKARLGGNTQNGGG-----------VAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENR 97
            :|.:|::|...:.::.||           ...|||:..|.....:.||   |..|...|::.:.|
Zfish     7 SPVKKRSRALDDIRDRGGSHPTSKKMGVISNSGGGSNNGNSSSKSDGG---SARRGLLGDKRDGR 68

  Fly    98 QGFQVANNSHQKQINESPKPAAGNVPAK--NNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGP 160
            : |.                  |:|.::  ||.      |...|..|:.|:.:......:..: .
Zfish    69 E-FD------------------GHVSSRTGNNH------GYTSPVASSSGKNHASSLSLEAAR-T 107

  Fly   161 NFRGRGGGPNQPNQNANQEQSNGYPGNQ-GDNKGGQG--------------------QR------ 198
            |.||....|...|::..:.......|:| .|.:...|                    :|      
Zfish   108 NSRGEARAPLPTNESEYKTLKISELGSQLSDEEIEDGLFHEFKKFGDVSVKISRVNDERIAFVNF 172

  Fly   199 ----GAGGGKHQRGN--------------RSRRSGGSGIMNS-----------------SMGGGG 228
                .|...||.||.              .:||...|.:...                 |..|.|
Zfish   173 RRPDDARAAKHARGRLVLYDRPLKIEAVYLNRRRSRSPVKEDHFSVVAGHRHLHTQRPLSPTGLG 237

  Fly   229 QRGEDFFIAQRLLDISGPTHELP-PIELPTDNKFV------------------------------ 262
            .|  |:.:.|..|....|....| |.||..:.:|.                              
Zfish   238 YR--DYRLQQLALGRLPPPPPPPLPRELEREREFAFYEARARPAYIAERAAPFREEDFISPEDDQ 300

  Fly   263 -GRNRLYVGNLTSDTTDDDLREMFKPYGEIGDI-FSNPEK----NFTFLRLDYYQNAEKAKRALD 321
             ....|::|||....|::|||..|:.:|.|.:: ...|.:    .:.||:.:....|.:||.::.
Zfish   301 RANRTLFLGNLDITVTENDLRRAFERFGTITEVDIKRPTRGQSSTYGFLKFENLDMAHRAKISMS 365

  Fly   322 GSLRKGRVLRVRF---APNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIV 383
            |.:.....:::.:   .|...:.|..|..:|....|.:.|:.||.|.    .:|.|...|...|.
Zfish   366 GKVVGRNPIKIGYGKATPTTRLWVGGLGPWVPLTALAREFDRFGTIR----TIDYRKGDTWAYIQ 426

  Fly   384 EFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRF 448
            ..:..::.:||..:   :.|.|                   |.||:.|.   ::|.         
Zfish   427 YESLDAAQAACTHM---RGFPL-------------------GGPDRRLR---VDFA--------- 457

  Fly   449 ACLNSFEHEYGSRWKQ--------------LHDLFKSKQDSLK-RE-----LKMEEDKLEAQMEY 493
                ..||.|..::.|              :|   ::..:::: ||     |...|.:|     |
Zfish   458 ----DTEHRYQQQFLQPLPLQHYEIMAESFVH---RATPEAIRVRERTPPPLHFREREL-----Y 510

  Fly   494 ARYEQETELLRQELK----------KRELDNERMKLEWEMREKQAEEIRKREEEYMH 540
            |..|.....:|:.::          :||...|...||.|:..::|...|:..|:..|
Zfish   511 AGAEWPAPTIRERVRTPAFEPLEHLERERRREAWSLERELPGREAARKRRLMEDGRH 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonA-lNP_536740.1 PRK12678 3..>219 CDD:237171 42/232 (18%)
Med15 <90..>191 CDD:312941 18/103 (17%)
RRM1_p54nrb_like 264..334 CDD:409769 18/74 (24%)
RRM2_p54nrb_like 339..418 CDD:409770 16/78 (21%)
NOPS_NONA_like 409..508 CDD:240580 19/118 (16%)
APG6_N <477..555 CDD:465452 19/80 (24%)
rbm15XP_001335820.1 RRM1_RBM15 124..201 CDD:409969 10/76 (13%)
RRM2_RBM15 297..383 CDD:409971 18/85 (21%)
RRM3_RBM15 386..458 CDD:409973 21/113 (19%)
PHA03307 495..>685 CDD:223039 19/78 (24%)
SPOC_RBM15 688..851 CDD:439212
Blue background indicates that the domain is not in the aligned region.

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