DRSC/TRiP Functional Genomics Resources

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Protein Alignment nonA-l and Rbm15

DIOPT Version :10

Sequence 1:NP_536740.1 Gene:nonA-l / 42026 FlyBaseID:FBgn0015520 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_001386490.1 Gene:Rbm15 / 684233 RGDID:1592713 Length:962 Species:Rattus norvegicus


Alignment Length:720 Identity:134/720 - (18%)
Similarity:225/720 - (31%) Gaps:252/720 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SLNSSPLPQRQQRGNSTN----------------KNLGKPTPPKLNAASDGNPAEKKARLGGNTQ 57
            |....|||:|..|....:                .:|.:|:..|   ..:.:|.:.|...||...
  Rat     3 SAGREPLPRRSPRWRRASPLCETSAGWRVSQLRRDDLRRPSTMK---GKERSPVKPKRSRGGEDS 64

  Fly    58 NGGG-----VAGGGGTGGGGGG----GGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINE 113
            :..|     :.|.||:.|...|    ||:...:...::.:|||::.     :.....|...:::.
  Rat    65 SSRGERSKKLGGSGGSNGSSSGKTDSGGSRRSLHLDKSSSRGGSRE-----YDTGGGSSSSRLHS 124

  Fly   114 SPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQ 178
            ...|:..|        |:|||   :...|::|.|     ||..:.|......|||.....:....
  Rat   125 YSSPSTKN--------SSGGG---ESRSSSRGGG-----GESRSSGAASSAPGGGDGVEYKTLKI 173

  Fly   179 EQSNGYPGNQGDNKG---------------------GQGQ-----------RGAGGGKHQRG--- 208
            .:......::....|                     |.|.           ..|...||.||   
  Rat   174 SELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLV 238

  Fly   209 ---------------NRSRR-------SGGSGIMNSSM--------GGGGQRG----------ED 233
                           .|||.       :..|.::.||:        ||||||.          .|
  Rat   239 LYDRPLKIEAVYVSRRRSRSPLDKDTYAPSSSVVGSSVGSHRHAPGGGGGQRSLSPGGAALGYRD 303

  Fly   234 FFIAQRLLDISGPTHELPPIELP------TDNKFVGRNR-------------------------- 266
            :.:.|..|....|.   ||..||      .|..|..|.|                          
  Rat   304 YRLQQLALGRLPPP---PPPPLPRELERERDYPFYDRVRPAYSLEPRVGAGAGAAPFREVDEISP 365

  Fly   267 ---------LYVGNLTSDTTDDDLREMFKPYGEIGDI-FSNPEKNFT----FLRLDYYQNAEKAK 317
                     |::|||....|::|||..|..:|.|.:: ...|.:..|    ||:.:....:.:||
  Rat   366 EDDQRANRTLFLGNLDITVTENDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAK 430

  Fly   318 RALDGSLRKGRVLRVRF---APNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTG 379
            .|:.|.:.....:::.:   .|...:.|..|..:|....|.:.|:.||.| |.:    |..|...
  Rat   431 IAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTI-RTI----DYRKGDS 490

  Fly   380 EGIVEFAKKSSASAC---------------LRL--CNEKCFFLTASLRPCLVEPMEVNNDNDG-- 425
            ...:::....:|.|.               ||:  .:.:..:....|:|..:...|:..|..|  
  Rat   491 WAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLTHYELVTDTFGHR 555

  Fly   426 LPDKTLNKKS----LEFR-------------------HERSVGPRFACLNSFEHEYGSRWKQLHD 467
            .||...:.:.    |.:|                   .|||.....:.:.::|            
  Rat   556 APDPLRSARDRTPPLLYRDRDRDLYPDSDWVPPPPPVRERSARAATSAVTAYE------------ 608

  Fly   468 LFKSKQDSLKRE---LKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAE 529
                ..|||.|.   ..::.|:.:..:..:|.:.....|.:|...|.||          |..:::
  Rat   609 ----PLDSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLD----------RSPESD 659

  Fly   530 EIRKR 534
            ..||:
  Rat   660 RPRKQ 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonA-lNP_536740.1 PRK12678 3..>219 CDD:237171 52/291 (18%)
Med15 <90..>191 CDD:312941 18/100 (18%)
RRM1_p54nrb_like 264..334 CDD:409769 21/109 (19%)
RRM2_p54nrb_like 339..418 CDD:409770 17/95 (18%)
NOPS_NONA_like 409..508 CDD:240580 21/126 (17%)
APG6_N <477..555 CDD:465452 11/61 (18%)
Rbm15NP_001386490.1 RRM1_RBM15 168..250 CDD:409969 8/81 (10%)
RRM2_RBM15 366..452 CDD:409971 19/85 (22%)
RRM3_RBM15 455..527 CDD:409973 15/76 (20%)
Metaviral_G <653..782 CDD:462833 4/22 (18%)
SPOC_SF 788..955 CDD:459247
Blue background indicates that the domain is not in the aligned region.

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