Sequence 1: | NP_001262646.1 | Gene: | nonA-l / 42026 | FlyBaseID: | FBgn0015520 | Length: | 630 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001035879.1 | Gene: | PSPC1 / 55269 | HGNCID: | 20320 | Length: | 523 | Species: | Homo sapiens |
Alignment Length: | 391 | Identity: | 152/391 - (38%) |
---|---|---|---|
Similarity: | 233/391 - (59%) | Gaps: | 27/391 - (6%) |
- Green bases have known domain annotations that are detailed below.
Fly 245 GPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDY 309
Fly 310 YQNAEKAKRALDGSLRKGRVLRVRFAPN-AIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDD 373
Fly 374 RGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEF 438
Fly 439 RHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELL 503
Fly 504 RQELKKR--------ELDNERMKLEWEMREKQAEEIRKREEEYM-HRYQNQLLRHEEDMRARQQE 559
Fly 560 NDLLMQAKKLNM-------ILDQQEGFGGSNSGFEHFDSPFEVFGNNSNN-STMAGPG-GPDNSD 615
Fly 616 G 616 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nonA-l | NP_001262646.1 | RRM1_p54nrb_like | 264..334 | CDD:240778 | 31/69 (45%) |
RRM2_p54nrb_like | 339..418 | CDD:240779 | 41/78 (53%) | ||
NOPS_NONA_like | 409..508 | CDD:240580 | 44/98 (45%) | ||
OmpH | <479..578 | CDD:281871 | 33/114 (29%) | ||
DUF4472 | 479..559 | CDD:291409 | 30/88 (34%) | ||
PSPC1 | NP_001035879.1 | RRM1_PSP1 | 81..151 | CDD:241030 | 31/69 (45%) |
Sufficient for paraspeckles localization | 125..358 | 102/233 (44%) | |||
RRM2_PSP1 | 157..236 | CDD:241033 | 41/78 (53%) | ||
NOPS_PSPC1 | 227..320 | CDD:240584 | 41/93 (44%) | ||
Sufficient for perinucleolar caps localization and interaction with NONO. /evidence=ECO:0000269|PubMed:16148043 | 231..358 | 49/127 (39%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 460..523 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 74 | 1.000 | Domainoid score | I9124 |
eggNOG | 1 | 0.900 | - | - | E1_KOG0115 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 303 | 1.000 | Inparanoid score | I2670 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1274880at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001632 | |
OrthoInspector | 1 | 1.000 | - | - | mtm8550 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR23189 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R4077 |
SonicParanoid | 1 | 1.000 | - | - | X1036 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
12 | 11.960 |