DRSC/TRiP Functional Genomics Resources

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Protein Alignment nonA-l and Rbm15b

DIOPT Version :10

Sequence 1:NP_536740.1 Gene:nonA-l / 42026 FlyBaseID:FBgn0015520 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_001386249.1 Gene:Rbm15b / 315988 RGDID:1305937 Length:887 Species:Rattus norvegicus


Alignment Length:673 Identity:131/673 - (19%)
Similarity:222/673 - (32%) Gaps:221/673 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQN-----------G 59
            ::|..:|||    ..||:|::..  :|...:..|.:.|..|..||  .|.|::           |
  Rat     3 RQNERDSSP----SGRGSSSSAK--RPREREREAEAGGRRAAHKA--SGGTKHPVPARARDKPRG 59

  Fly    60 GGVAGG----------------GGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQ 108
            .|..||                |.:.|..||||.||  :.|.:...||             .|.:
  Rat    60 SGGGGGHRDGRAAGDANHRASSGRSSGAPGGGGRTG--KASGDPGAGG-------------ASPR 109

  Fly   109 KQINESPKPAAGNVPAKNNELSAGGGGQNQPN-----------------------HSNKGQG--- 147
            ......|.|..|..|       ||.|....|.                       |..|..|   
  Rat   110 ASPLPPPPPPPGAEP-------AGPGTTAAPEYKTLLISSLSPALPAEHLEDRLFHQFKRFGEIS 167

  Fly   148 -NQGDQGEQGNQG-PNFRG------------------------------RGGGPNQPNQNANQEQ 180
             ......|.|... .|||.                              ||||.::.:.:::...
  Rat   168 LRLSHTPELGRVAYVNFRHPQDAREARQHALARQLLLYDRPLKVEPVYLRGGGSSRRSSSSSAAA 232

  Fly   181 SNGYPG--NQGDNKGGQGQRGAGGGKHQ----------RGNRSRRSGGSGIMN----SSMGGGGQ 229
            |...||  ...|..|.....|....|.:          |..|:|.:..:..::    :::|...:
  Rat   233 STPPPGPPTPADPLGYLPLHGGYQYKQRSLSPVAAPPLREPRARHAAAAFALDAAAAAAVGLSRE 297

  Fly   230 RGEDFFIAQRLLDISGPTHELPPI----ELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGE 290
            |..|::   .|.|..|..:....:    .:|.|::...|| |::|||....::.:||..|:.||.
  Rat   298 RALDYY---GLYDDRGRPYSYQAVCEEDLMPEDDQRATRN-LFIGNLDHSVSEVELRRAFEKYGI 358

  Fly   291 IGD-IFSNPEKN----FTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFA---PNAIVRVTNLNQ 347
            |.: :...|.:.    :.||:......|.:||.|:.|.:.....:::.:.   |...:.|..|..
  Rat   359 IEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKANPTTRLWVGGLGP 423

  Fly   348 FVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSA-SACLRLCNEKCFFLTASLRP 411
            ..|...|.:.|:.||.| |.:    |..|......:::....:| :||.::   :.|.|      
  Rat   424 NTSLAALAREFDRFGSI-RTI----DHVKGDSFAYIQYESLDAAQAACAKM---RGFPL------ 474

  Fly   412 CLVEPMEVNNDNDGLPDKTLN---KKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQ 473
                         |.||:.|.   .|:.|.|:.:...|         ......::.|.|.: ::.
  Rat   475 -------------GGPDRRLRVDFAKAEETRYPQQYQP---------SPLPVHYELLTDGY-TRH 516

  Fly   474 DSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLE--WEMREKQAEEIRKREE 536
            .:|..:|:: .|:....:.|:                  |.:|..||  |....|.::.      
  Rat   517 RNLDADLRV-RDRTPPHLLYS------------------DRDRTFLEGDWTSLSKSSDR------ 556

  Fly   537 EYMHRYQNQLLRHEEDMRARQQE 559
                  :|.|..:...:|:|..|
  Rat   557 ------RNSLEGYSRSVRSRSGE 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonA-lNP_536740.1 PRK12678 3..>219 CDD:237171 61/309 (20%)
Med15 <90..>191 CDD:312941 26/160 (16%)
RRM1_p54nrb_like 264..334 CDD:409769 20/74 (27%)
RRM2_p54nrb_like 339..418 CDD:409770 16/79 (20%)
NOPS_NONA_like 409..508 CDD:240580 14/101 (14%)
APG6_N <477..555 CDD:465452 11/79 (14%)
Rbm15bNP_001386249.1 RRM1_RBM15B 134..215 CDD:409970 8/80 (10%)
RRM2_RBM15B 325..409 CDD:409972 22/84 (26%)
RRM3_RBM15B 412..487 CDD:409974 21/101 (21%)
SF-CC1 568..>704 CDD:273721 3/6 (50%)
SPOC_RBM15B 718..885 CDD:439213
Blue background indicates that the domain is not in the aligned region.

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