DRSC/TRiP Functional Genomics Resources

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Protein Alignment nonA-l and psf-1

DIOPT Version :9

Sequence 1:NP_001262646.1 Gene:nonA-l / 42026 FlyBaseID:FBgn0015520 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_496153.2 Gene:psf-1 / 187885 WormBaseID:WBGene00011275 Length:201 Species:Caenorhabditis elegans


Alignment Length:151 Identity:24/151 - (15%)
Similarity:53/151 - (35%) Gaps:37/151 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   420 NNDNDGLPDKTLNKKSLEFRHERSVGPRF------ACLNSFEHEYGSRWKQLHDLFKSK------ 472
            :.:..|:.||.| :..||.:....|.|.:      .|           ::::.:||:..      
 Worm     5 DQNRGGVADKAL-QLVLEMKRNPDVLPPYNTELVRQC-----------YQKIDELFQKNAAVVEK 57

  Fly   473 -QDSLKRELKMEEDKLEAQMEYAR----YEQETELLRQELKKRELDNERMKLEWEMREKQAEEIR 532
             :..|..:..:.:.:|.|.....|    |..|        :|..:.:.|.|....:.......:.
 Worm    58 IRAGLPHDSTLLQPRLAAMCHIRRCMMAYVNE--------RKNRIRSFRWKYGGALPASVRNALC 114

  Fly   533 KREEEYMHRYQNQLLRHEEDM 553
            ..|.::.:.|.:.|.|.:.::
 Worm   115 DAEIQFFNEYSSTLARFQSNL 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonA-lNP_001262646.1 RRM1_p54nrb_like 264..334 CDD:240778
RRM2_p54nrb_like 339..418 CDD:240779
NOPS_NONA_like 409..508 CDD:240580 17/104 (16%)
OmpH <479..578 CDD:281871 12/79 (15%)
DUF4472 479..559 CDD:291409 12/79 (15%)
psf-1NP_496153.2 GINS_A_psf1 12..137 CDD:212548 23/144 (16%)
COG5230 18..200 CDD:227555 20/137 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2409
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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