DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17560 and CER4

DIOPT Version :9

Sequence 1:NP_650567.1 Gene:CG17560 / 42022 FlyBaseID:FBgn0038450 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_567936.5 Gene:CER4 / 829521 AraportID:AT4G33790 Length:493 Species:Arabidopsis thaliana


Alignment Length:498 Identity:135/498 - (27%)
Similarity:227/498 - (45%) Gaps:71/498 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 FFKNKTVFLTGGTGFLGKVIIEKLLRTT-EVNRIYSLIRPKRGVPIEDRIT-TWAKDPVFEVLLR 70
            :..||::.:.|..|||..:.:||:||.. .|.::|.|:|..:|.....|.. ...|..:|:||..
plant    13 YLDNKSILVVGAAGFLANIFVEKILRVAPNVKKLYLLLRASKGKSATQRFNDEILKKDLFKVLKE 77

  Fly    71 TKPDAL-----QRVCPIAGD-CLDPDLGISQSD-QRILTAEVQIVIHGAATVRFDEALHISLAIN 128
            .....|     :::..:.|| ||: |||:...| ...:..:|..:::.|||.:|||...::|.||
plant    78 KYGPNLNQLTSEKITIVDGDICLE-DLGLQDFDLAHEMIHQVDAIVNLAATTKFDERYDVALGIN 141

  Fly   129 VRATRLMLQLAKQMTQLVSFVHVSTAY----SNCVVHDIAERFYPEHLNCSS------------- 176
            ......:|..||:..::...|||||||    .:.::.:...|. .|.||.::             
plant   142 TLGALNVLNFAKRCAKVKILVHVSTAYVCGEKSGLIMETPYRM-GETLNGTTGLDINYEKKLVQE 205

  Fly   177 --DKILAVG---ELVSNKLLD-AMEPSLVGSFPNTYTYTKALAEDVILREAGNLPLSIFRPAIIM 235
              |::..:|   |.::..:.| .:..:.:..:||||.:|||:.|.::..:..||.|.:.||:||.
plant   206 KLDQLRVIGAAPETITETMKDLGLRRAKMYGWPNTYVFTKAMGEMMVGTKRENLSLVLLRPSIIT 270

  Fly   236 STYKEPLVGWVDNLFGPLALCFGGARGIMRVTTVDPSAKISLVPADYCVNVALACAWRTAEISVQ 300
            ||:|||..||.:.:....:|..|..:|.:.....|..|...::|||..||..|      ..::.|
plant   271 STFKEPFPGWTEGIRTIDSLAVGYGKGKLTCFLCDLDAVSDVMPADMVVNSIL------VSMAAQ 329

  Fly   301 NGKVTTPPIYAFAPSENNLMSYGNFIKSSIIYRDIIPLT----KMLWYPFVLCISTTSLFPLAAF 361
            .|| ....||....|..|.|....|.:.:..|..|.|.|    |::....:..:|:     :.:|
plant   330 AGK-QEEIIYHVGSSLRNPMKNSKFPELAYRYFSIKPWTNKEGKVVKVGAIEILSS-----MRSF 388

  Fly   362 FLHTLPGYFFDLLLRLKGRK---PILVDLYRK-----------IHKNIAVLGPFSSTTWNFDMTN 412
            ..:....|    |:.|||.:   .||..|:.|           |.:.:.:..|:......||.:|
plant   389 HRYMTIRY----LIALKGLELVNIILCKLFEKEFQYFNKKINFIFRLVDLYQPYLFFYGIFDDSN 449

  Fly   413 TMELREAMSKQ--DRNLYDFDMAQLDWNDYF-KAAMYGMRLYI 452
            |.:||:.:||.  :..::.||...|||:||| ...:.|:..|:
plant   450 TEKLRKMVSKTGVENEMFYFDPKVLDWDDYFLNTHVIGLLKYV 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17560NP_650567.1 PLN02996 1..441 CDD:215538 131/484 (27%)
FAR-N_SDR_e 12..327 CDD:187547 98/346 (28%)
Sterile 364..454 CDD:281068 29/106 (27%)
CER4NP_567936.5 PLN02996 6..493 CDD:215538 135/498 (27%)
FAR-N_SDR_e 17..365 CDD:187547 100/356 (28%)
Sterile 396..493 CDD:281068 29/101 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.970

Return to query results.
Submit another query.