DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17560 and FAR8

DIOPT Version :9

Sequence 1:NP_650567.1 Gene:CG17560 / 42022 FlyBaseID:FBgn0038450 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_190042.2 Gene:FAR8 / 823581 AraportID:AT3G44560 Length:496 Species:Arabidopsis thaliana


Alignment Length:496 Identity:142/496 - (28%)
Similarity:225/496 - (45%) Gaps:86/496 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 FFKNKTVFLTGGTGFLGKVIIEKLLRT-TEVNRIYSLIRPKRGVPIEDRITTWA--KDPVFEVLL 69
            |.:|||:.:||.||||.||.:||:||. ..||::|.::|.........|:.|.|  || :|:||.
plant     8 FLQNKTILVTGATGFLAKVFVEKILRVQPNVNKLYLVVRASDNEAATKRLRTEAFEKD-LFKVLR 71

  Fly    70 RTKPD------ALQRVCPIAGDCLDPDLGISQSDQR-ILTAEVQIVIHGAATVRFDEALHISLAI 127
            ....|      ..::|.|:|||.....||:..|:.| .:..|:.||::.|||..|||...|.|.|
plant    72 DNLGDEKLNTLLSEKVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAATTNFDERYDIGLGI 136

  Fly   128 NVRATRLMLQLAKQMTQLVSFVHVSTAYSNCVVHD----IAER-FYPEHLNCSSDKI-LAVG--- 183
            |......:|..||:..:....:||||||   |..:    :.|: |..|.: |:.:.: |.:.   
plant   137 NTFGALNVLNFAKKCVKAQLLLHVSTAY---VCGEKPGLLPEKPFVMEEI-CNENGLQLDINLER 197

  Fly   184 ELVSNKLLD------------------AMEPSLVGSFPNTYTYTKALAEDVILREAGNLPLSIFR 230
            ||:..:|.:                  .||.:.:..:||||.:||::.|.::.....||||.|.|
plant   198 ELMKQRLKELNEQGCSEEGTTFYMKELGMERAKLHGWPNTYVFTKSMGEMLLGNHKENLPLVIIR 262

  Fly   231 PAIIMSTYKEPLVGWVDNLFGPLALCFGGARGIMRVTTVDPSAKISLVPADYCVNVALACAWRTA 295
            |.:|.||..||..||::.|....::.....:|:::...||.::...::|||...|..:|.|    
plant   263 PTMITSTLFEPFPGWIEGLRTVDSVIIAYGKGVLKCFLVDVNSVCDMIPADMVANAMIAAA---- 323

  Fly   296 EISVQNGKVTTPPIYAFAPSENNLMSYGN--------FIKSSIIYRD--IIPLTKMLWYPFVLCI 350
              :...|......:|....|..|.:.||.        |.|:|:..|:  :|.::||...|     
plant   324 --ATHAGGSKVHMVYQVGSSHQNPIIYGEIREILFCYFTKNSLRSRNGSMITVSKMKLIP----- 381

  Fly   351 STTSLFPLAAFFLHTLPGYFFDLL-----------LRLKGRKPILVDLYRKIHKNIAVLGPFSST 404
             |.:||.|.....:.||.....|:           .:.|.||   :|:..::   :.:..|:...
plant   382 -TLALFSLYMTIRYKLPVQLLKLVDIIYPSREGDEYKNKNRK---IDMVMRL---VKLYEPYVLF 439

  Fly   405 TWNFDMTNTMELREAMSKQD-RN----LYDFDMAQLDWNDY 440
            ...||..||..|.....::| ||    ::|||...:.|.||
plant   440 KGIFDDRNTKNLCAKQKEEDNRNSENFMFDFDPKIIKWKDY 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17560NP_650567.1 PLN02996 1..441 CDD:215538 142/496 (29%)
FAR-N_SDR_e 12..327 CDD:187547 107/359 (30%)
Sterile 364..454 CDD:281068 22/93 (24%)
FAR8NP_190042.2 PLN02996 1..495 CDD:215538 142/496 (29%)
FAR-N_SDR_e 12..362 CDD:187547 107/360 (30%)
Sterile 394..495 CDD:281068 22/93 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.970

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