Protein Alignment CG17560 and MS2

DIOPT Version :10

• Sequence 1: NP_650567.1
• Gene: CG17560 / 42022
• FlyBaseID: FBgn0038450
• Length: 499
• Species: Drosophila melanogaster
• Sequence 2: NP_187805.1
• Gene: MS2 / 820372
• AraportID: AT3G11980
• Length: 616
• Species: Arabidopsis thaliana
• Alignment Length: 524
• Identity: 134/524 - (25%)
• Similarity: 231/524 - (44%)
• Gaps: 108/524 - (20%)

  Fly     5 IQGFFKNKTVFLTGGTGFLGKVIIEKLLR-TTEVNRIYSLIRPKRGVPIEDRITTWAKD-PVFEV 67
            |..|.:.|...:||.||||.||:|||:|| ..:|::||.||:.|......:|:.....| .:|..
plant   124 IISFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERLKNEVLDAELFNT 188

  Fly    68 LLRTKPDA-----LQRVCPIAGDCLDPDLGISQSDQRILTAEVQIVIHGAATVRFDEALHISLAI 127
            |..|...:     |.::.|:.|:..|.::|:.......:..||.::|:.||...|:|...::|.|
plant   189 LKETHGASYMSFMLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINSAANTTFNERYDVALDI 253

  Fly   128 NVRATRLMLQLAKQMTQLVSFVHVSTAYSNCVVHDIAERFYPEHLNCSSDKILAVGELV------ 186
            |.|....::..||:..:|..|:.|||||.|           .:......:|..::|:.:
plant   254 NTRGPGNLMGFAKKCKKLKLFLQVSTAYVN-----------GQRQGRIMEKPFSMGDCIATENFL 307

  Fly   187 --SNKLLD-------AMEPSLVGS---------------------FPNTYTYTKALAEDVILREA 221
              :.|.||       |:|.:..|:                     :.:||.:|||:.|.:|....
plant   308 EGNRKALDVDREMKLALEAARKGTQNQDEAQKMKDLGLERARSYGWQDTYVFTKAMGEMMINSTR 372

  Fly   222 GNLPLSIFRPAIIMSTYKEPLVGWVD--NLFGPLALCFGGARGIMRVTTVDPSAKISLVPADYCV 284
            |::|:.|.||::|.||||:|..||::  .:..|:.||:|  :|.:....|||...:.:||||..|
plant   373 GDVPVVIIRPSVIESTYKDPFPGWMEGNRMMDPIVLCYG--KGQLTGFLVDPKGVLDVVPADMVV 435

  Fly   285 NVALACAWRTAEISVQNGKVTTPP-----IYAFAPSENNLMSYGNFIKSSIIYRDIIPLTKMLW- 343
            |..||..       .::|...:.|     :|..|.|..|          .:::.|   |.::|:
plant   436 NATLAAI-------AKHGMAMSDPEPEINVYQIASSAIN----------PLVFED---LAELLYN 480

  Fly   344 -YPFVLCISTTSLFPLAAFFLHTLPGY--FFDLLLR--------LKGRKPILVDLYRKIH----- 392
             |....|:.:.. .|:....:......  |.|.|.|        :.|...:...:.:|:.
plant   481 HYKTSPCMDSKG-DPIMVRLMKLFNSVDDFSDHLWRDAQERSGLMSGMSSVDSKMMQKLKFICKK 544

  Fly   393 -----KNIA-VLGPFSSTTWNFDMTNTMELREAMSKQDRNLYDFDMAQLDWNDYF-KAAMYGMRL 450
                 |::| :..|::.....||.:||..|.|.||:.::..:.||:..::|.||. ...:.|:|.
plant   545 SVEQAKHLATIYEPYTFYGGRFDNSNTQRLMENMSEDEKREFGFDVGSINWTDYITNVHIPGLRR 609

  Fly   451 YIGK 454
            ::.|
plant   610 HVLK 613

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG17560	NP_650567.1	FAR-N_SDR_e	12..327	CDD:187547	101/364 (28%)
		Sterile	363..454	CDD:460779	24/112 (21%)
MS2	NP_187805.1	PLN02503	1..616	CDD:215279	134/524 (26%)