DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17560 and Far2

DIOPT Version :9

Sequence 1:NP_650567.1 Gene:CG17560 / 42022 FlyBaseID:FBgn0038450 Length:499 Species:Drosophila melanogaster
Sequence 2:XP_006237759.1 Gene:Far2 / 500368 RGDID:1565966 Length:515 Species:Rattus norvegicus


Alignment Length:520 Identity:174/520 - (33%)
Similarity:274/520 - (52%) Gaps:58/520 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SEIQGFFKNKTVFLTGGTGFLGKVIIEKLLRTT-EVNRIYSLIRPKRGVPIEDRITTWAKDPVFE 66
            |.|..|:.||::.:||.|||||||::|||.||: .:..||.|:|||.|..:::|:.......:||
  Rat     2 SMIAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSKLFE 66

  Fly    67 VLLRTKPDALQRVCPIAGDCLDPDLGISQSDQRILTAEVQIVIHGAATVRFDEALHISLAINVRA 131
            .:....|:..:::.||:.|....|..||:.|.:.|.:...||.|.|||||||..|..::.:||.|
  Rat    67 RVKEVCPNVHEKIRPISADLNQRDFAISKEDMQELLSCTNIVFHCAATVRFDAHLREAVQLNVTA 131

  Fly   132 TRLMLQLAKQMTQLVSFVHVSTAYSNCVVHDIAERFYPEHLNCSSD--KILAVGELVSNKLLDAM 194
            |:.:|.:|.:|.:|.:|:|:|||:|||.:..|.|..||    |..:  ||:...|.:.:.:::.:
  Rat   132 TQQLLLMASEMPKLEAFIHISTAFSNCNLSHIDEVIYP----CPVEPRKIIDSMEWLDDSIIEEI 192

  Fly   195 EPSLVGSFPNTYTYTKALAEDVILREAGNLPLSIFRPAIIMSTYKEPLVGWVDNLFGPLALCFGG 259
            .|.|:|..||||||||||.|.|:.:|:|||.::|.||:|:.:|::||..||||||.||..|....
  Rat   193 TPKLIGDRPNTYTYTKALGEVVVQQESGNLNVAIVRPSIVGATWQEPFPGWVDNLNGPSGLIIAT 257

  Fly   260 ARGIMRVTTVDPSAKISLVPADYCVNVALACAWRTAEISVQNGKVTTPPIYAFAPSENNLMSYGN 324
            .:|.:|.....|.|...|:|.|..||:.:|..|.||        |..|                 
  Rat   258 GKGFLRSIKATPMAVADLIPVDTVVNLTIAVGWYTA--------VHRP----------------- 297

  Fly   325 FIKSSIIYRDII-PLTKMLWYPFVL-CISTTSLFPLAAFF--------------------LHTLP 367
              ||::||.... .|....||...| .::|....|..:.|                    .|..|
  Rat   298 --KSTLIYHSTSGNLNPCNWYEMGLQVLATVEKIPFESAFRRPNADFTTNNFTTQYWNTVSHWAP 360

  Fly   368 GYFFDLLLRLKGRKPILVDLYRKIHKNIAVLGPFSSTTWNFDMTNTMELREAMSKQDRNLYDFDM 432
            ...:|..|||.||||.::.|..::.|.|::|..|.:.:|.:...||..|...:|.:|:.:::||:
  Rat   361 AIIYDFYLRLTGRKPRMLKLMNRLLKTISMLEYFINHSWEWSTNNTEMLLSELSPEDQRVFNFDV 425

  Fly   433 AQLDWNDYFKAAMYGMRLYIGKEKPTAESIAKGLKLRMRLKVLHYAFASSLVALAGYILYSLARL 497
            .||:|.:|.:..:.|::.|:.||  ....|.|..:...||:.:||.|.::|..:...:|.:.:::
  Rat   426 RQLNWLEYIENYVLGVKKYLLKE--DLAGIPKAKQHLKRLRNIHYLFNTALFLIIWRLLIARSQM 488

  Fly   498  497
              Rat   489  488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17560NP_650567.1 PLN02996 1..441 CDD:215538 160/462 (35%)
FAR-N_SDR_e 12..327 CDD:187547 119/317 (38%)
Sterile 364..454 CDD:281068 29/89 (33%)
Far2XP_006237759.1 FAR-N_SDR_e 11..318 CDD:187547 126/337 (37%)
Sterile 357..447 CDD:397244 29/89 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351510
Domainoid 1 1.000 94 1.000 Domainoid score I7266
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.850

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