DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17560 and Far1

DIOPT Version :9

Sequence 1:NP_650567.1 Gene:CG17560 / 42022 FlyBaseID:FBgn0038450 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001011933.1 Gene:Far1 / 293173 RGDID:1306647 Length:515 Species:Rattus norvegicus


Alignment Length:499 Identity:167/499 - (33%)
Similarity:265/499 - (53%) Gaps:20/499 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IQGFFKNKTVFLTGGTGFLGKVIIEKLLRT-TEVNRIYSLIRPKRGVPIEDRITTWAKDPVFEVL 68
            |..:::.|.:.|||.|||||||::|||||: .:||.:|.|:|.|.|...::|:.......:|:.|
  Rat     4 IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGKLFDRL 68

  Fly    69 LRTKPDALQRVCPIAGDCLDPDLGISQSDQRILTAEVQIVIHGAATVRFDEALHISLAINVRATR 133
            ....||..|::..|..:...|.|.:|:.|:.|:.....::.|.||||||:|.|..::.:||.|||
  Rat    69 RDENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQLNVIATR 133

  Fly   134 LMLQLAKQMTQLVSFVHVSTAYSNCVVHDIAERFYPEHLNCSSDKILAVGELVSNKLLDAMEPSL 198
            .::.||:||..|..|:||||||:.|....|.|..||..::  ..|::...|.:.:.|::.:.|.|
  Rat   134 QLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVD--PKKLIDSLEWMDDGLVNDITPKL 196

  Fly   199 VGSFPNTYTYTKALAEDVILREAGNLPLSIFRPAIIMSTYKEPLVGWVDNLFGPLALCFGGARGI 263
            :|..||||.|||||||.|:.:|...|.::|.||:|:.:::|||..||:||..||..|.....:||
  Rat   197 IGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGI 261

  Fly   264 MRVTTVDPSAKISLVPADYCVNVALACAW-----RTAEISVQNGKVTTPPIYAFAPSENNLMSYG 323
            :|......:|...|||.|..||.:||.||     |...|.|.|  .||.....|...|     .|
  Rat   262 LRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIMVYN--CTTGSTNPFHWGE-----VG 319

  Fly   324 NFIKSSIIYRDIIPLTKMLWYPFVLCISTTSLFPLAAFFLHTLPGYFFDLLLRLKGRKPILVDLY 388
            :::..|.   ...||.::..:|:|...|...:........||:|....||.|||.|:||.::...
  Rat   320 DYLNHSF---KTNPLNQVFRHPYVKFYSNNLMLHYWKGVKHTVPALLLDLALRLTGQKPWMMKTI 381

  Fly   389 RKIHKNIAVLGPFSSTTWNFDMTNTMELREAMSKQDRNLYDFDMAQLDWNDYFKAAMYGMRLYIG 453
            .::||.:..|..|:|.:|.::..|...|...::.:|:..::.|:.||.|.:|.:....|.:.|:.
  Rat   382 TRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVL 446

  Fly   454 KEKPTAESIAKGLKLRMRLKVLHYAFASSLVALAGYILYSLARL 497
            .|:.:....|:  |...:|:.:.|.|.:.||.|...|..:.:::
  Rat   447 NEEMSGLPAAR--KHLNKLRNIRYGFNTILVILIWRIFIARSQM 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17560NP_650567.1 PLN02996 1..441 CDD:215538 154/441 (35%)
FAR-N_SDR_e 12..327 CDD:187547 123/320 (38%)
Sterile 364..454 CDD:281068 27/89 (30%)
Far1NP_001011933.1 PLN02996 2..446 CDD:215538 157/453 (35%)
FAR-N_SDR_e 11..330 CDD:187547 124/330 (38%)
Sterile 371..447 CDD:281068 19/75 (25%)
Necessary and sufficient for PEX19-mediated localization into peroxisome membrane. /evidence=ECO:0000250|UniProtKB:Q8WVX9 451..507 9/40 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351493
Domainoid 1 1.000 94 1.000 Domainoid score I7266
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.750

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