DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17562 and Far2

DIOPT Version :10

Sequence 1:NP_650566.1 Gene:CG17562 / 42021 FlyBaseID:FBgn0038449 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001414732.1 Gene:Far2 / 500368 RGDID:1565966 Length:515 Species:Rattus norvegicus


Alignment Length:509 Identity:180/509 - (35%)
Similarity:274/509 - (53%) Gaps:56/509 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FRSKTVFLTGATGFLGKVVIEKLLRTT-EVKRIYVLIRPKRGVEIKDRIITWSKDAVFELLLKSK 72
            :.:|::.:||||||||||::|||.||: .:|.||:|:|||.|..:::|:.......:||.:.:..
  Rat     8 YSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSKLFERVKEVC 72

  Fly    73 PEALQRVCPIAGDCLDFDLGISENDRRLLASEVQIVIHGAATVRFNEPLHVALAINTRATKLMIQ 137
            |...:::.||:.|....|..||:.|.:.|.|...||.|.||||||:..|..|:.:|..||:.::.
  Rat    73 PNVHEKIRPISADLNQRDFAISKEDMQELLSCTNIVFHCAATVRFDAHLREAVQLNVTATQQLLL 137

  Fly   138 LAKEMRQLEAFVHVSTAFSNCVIYNIKENFYPEHLNCSSD--KVLAMAELMSDELLDNMEQALLG 200
            :|.||.:||||:|:|||||||.:.:|.|..||    |..:  |::...|.:.|.:::.:...|:|
  Rat   138 MASEMPKLEAFIHISTAFSNCNLSHIDEVIYP----CPVEPRKIIDSMEWLDDSIIEEITPKLIG 198

  Fly   201 SFPNTYTYTKALAEDVILKEAGGLPLCIFRPAVIIAAHKEPISGWIDNMYGPMAILFGVARGVLR 265
            ..||||||||||.|.|:.:|:|.|.:.|.||:::.|..:||..||:||:.||..::....:|.||
  Rat   199 DRPNTYTYTKALGEVVVQQESGNLNVAIVRPSIVGATWQEPFPGWVDNLNGPSGLIIATGKGFLR 263

  Fly   266 IATIDHHAEASLVPVDYCANLTLACTWKTIV------------EGN-------EMGTQETPLIYQ 311
            .......|.|.|:|||...|||:|..|.|.|            .||       |||.|....:.:
  Rat   264 SIKATPMAVADLIPVDTVVNLTIAVGWYTAVHRPKSTLIYHSTSGNLNPCNWYEMGLQVLATVEK 328

  Fly   312 LAPIEQNKITHGEFIRHALDGRTNCPLTKMIWYPFIHCITVPWLFPLAAFFYHTLPAYFFDLALW 376
            : |.|      ..|.|...|..|| ..|...|....|     |           .||..:|..|.
  Rat   329 I-PFE------SAFRRPNADFTTN-NFTTQYWNTVSH-----W-----------APAIIYDFYLR 369

  Fly   377 LSGRKPRLVKVYQKIHKTLGILGPFACKSWRFDMRNTDHLRQQMSEEDRRIYYFDMVSLNWKEYF 441
            |:|||||::|:..::.||:.:|..|...||.:...||:.|..::|.||:|::.||:..|||.||.
  Rat   370 LTGRKPRMLKLMNRLLKTISMLEYFINHSWEWSTNNTEMLLSELSPEDQRVFNFDVRQLNWLEYI 434

  Fly   442 VQALRGMRQFLGNEAPTPESIAQGKKLIKRLKLLHHILQGVLCFVALLALWSLV 495
            ...:.|::::|..|  ....|.:.|:.:|||:.:|::....|    .|.:|.|:
  Rat   435 ENYVLGVKKYLLKE--DLAGIPKAKQHLKRLRNIHYLFNTAL----FLIIWRLL 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17562NP_650566.1 FAR-N_SDR_e 12..329 CDD:187547 129/338 (38%)
Sterile 363..452 CDD:460779 32/88 (36%)
Far2NP_001414732.1 None

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