DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10345 and scarb2c

DIOPT Version :9

Sequence 1:NP_650563.2 Gene:CG10345 / 42017 FlyBaseID:FBgn0027562 Length:552 Species:Drosophila melanogaster
Sequence 2:NP_001352071.1 Gene:scarb2c / 337532 ZFINID:ZDB-GENE-030131-5789 Length:478 Species:Danio rerio


Alignment Length:499 Identity:124/499 - (24%)
Similarity:214/499 - (42%) Gaps:74/499 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 SAALGMTLLFFGSLVIISDPLQSILDT----QLSLKPGTLLHRLWLLPPLDVYINVYMFNYTNVD 77
            :.||.:.||..|..:.::..||.:::.    |:.|:.||....:|..||..||:..|.||.||..
Zfish    11 AGALCVLLLICGIALELTRVLQKLVNNTVKQQIVLENGTEAFSVWQNPPPPVYMQFYFFNLTNPA 75

  Fly    78 EFTSGRASKLQLQEVGPYVYKEVLSNHNVTYNESNNTITYSPKREYVFAPERSVGDPKIDRIRAP 142
            |..||  .|..:.::|||.|:|......|.:.::...:.....:.|||.|..|.|. :.|.:|..
Zfish    76 EVMSG--DKPSVVQIGPYTYREYRPMEEVKFMDNGTRVAAINPKTYVFEPNMSRGS-QDDLVRTV 137

  Fly   143 NIPLMGV---------TTLASSLSMFAALGLSAITRQLNSQPMLEMSVHDYMWGYEDHLVELASR 198
            |||.:.|         ..|.|.|.....:|:....|           |.|.:|||||.|::....
Zfish   138 NIPAVTVMEKYKDSILARLISDLMKAKGVGVFETFR-----------VGDLLWGYEDPLLKELHM 191

  Fly   199 FVPNWIDFSSFGIMEKLFREGNESNVFNMNLPEPKDKYGMRMTDAPRGYTVDSINGERGFKGWQY 263
            .||:    ..||:..|  :.|.|.:.:.:...:|         |.....::|..||:|....|..
Zfish   192 LVPD----DHFGLFYK--KNGTEYDSYVLLTGKP---------DYQDFASIDEWNGQRSLNWWSS 241

  Fly   264 NEETNGTMCNRIWGSHDATLFPLDMDENDEFFLYRRTFCRRLPVKFNRTTTFNGLDAFEFVMEPD 328
            .|      ||.|.|:..|:..|: :.:.|..:::....||.|.|::....:..|:..|.||...|
Zfish   242 EE------CNMINGTDGASFHPI-ITKADRLYIFSSDLCRSLYVQYECDVSVQGVPGFRFVPPAD 299

  Fly   329 SFDSEVDNANSSCYC-KNNRCLKKGVGNVSPCYYNIPLAITYPHFMHADPSLLEPFDGLQPNVSR 392
            .|.|...|.:::.:| ....||..|:.|.|.|....|:.::.|||..||...::...|::| :..
Zfish   300 VFSSPDINPDNAGFCVPPGHCLGSGLLNASVCKQGAPIIMSSPHFYQADQKFVDDIWGMKP-IKE 363

  Fly   393 FTSTFV-VQPQLGAPMQGTHLRLQANQVVGKVNFNRMMTPFENMILPLLWVD----------LNI 446
            ...||. :.|..|..:||.. |:|.|..:.:.:........:.::.|:::::          ..:
Zfish   364 EHQTFADINPLTGIVLQGAK-RVQVNVYLQQHSSFSQTGKIQTLVFPVMYINESAFIDEESAKKL 427

  Fly   447 DVLCLTLRLLIHGIKWGFPLLQWSAALGMLLAGVYQLCSALLLC 490
            ..:.|...::|:     .|.:..|  :|:||..::    .:|:|
Zfish   428 HAVVLNANVVIN-----IPFIVIS--VGILLGIIF----IVLMC 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10345NP_650563.2 CD36 21..488 CDD:279474 120/491 (24%)
scarb2cNP_001352071.1 CD36 15..457 CDD:307331 120/490 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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