DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scp2 and scf

DIOPT Version :9

Sequence 1:NP_524381.1 Gene:Scp2 / 42015 FlyBaseID:FBgn0020907 Length:184 Species:Drosophila melanogaster
Sequence 2:NP_477392.1 Gene:scf / 38145 FlyBaseID:FBgn0025682 Length:329 Species:Drosophila melanogaster


Alignment Length:120 Identity:29/120 - (24%)
Similarity:53/120 - (44%) Gaps:21/120 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 KDTPKNKETYDLMMEIWTGLRSKADKDNDGQVSVDEWCNMWDAYA------KDPSSVMDWQNAYM 105
            :|.|..|..  ::.|..|.|    |||:||::||||:  :.|.|.      ::|..|.:.:.|:.
  Fly   196 EDHPSMKGV--VLRETITDL----DKDHDGKISVDEY--IGDMYRSTGAEDEEPEWVANEREAFS 252

  Fly   106 NFMFDLEDASHDGGIDVTEFTLVCSSYGLEKTECEE---AFAKMSQGQSEVTREQ 157
            ..    .|...||.::..|.....:.:..:.:|.|.   .|...:....::|:|:
  Fly   253 TH----RDLDKDGYLNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLTKEE 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Scp2NP_524381.1 EFh 10..87 CDD:298682 15/39 (38%)
EF-hand_7 14..86 CDD:290234 15/38 (39%)
FRQ1 71..163 CDD:227455 23/96 (24%)
scfNP_477392.1 EF-hand_7 170..227 CDD:290234 15/38 (39%)
EFh 206..273 CDD:238008 21/76 (28%)
EF-hand_7 248..308 CDD:290234 10/60 (17%)
EFh 248..306 CDD:298682 10/60 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10827
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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