DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG14891 and Skp2

DIOPT Version :10

Sequence 1:NP_650560.1 Gene:CG14891 / 42013 FlyBaseID:FBgn0038445 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_011243661.1 Gene:Skp2 / 27401 MGIID:1351663 Length:434 Species:Mus musculus


Alignment Length:431 Identity:92/431 - (21%)
Similarity:157/431 - (36%) Gaps:151/431 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 SWHPTPVEESGTLSAYDLPITDDIWWKVLDYLSLNERLNFAASCERFQAIYELDSHRINHVLNMK 161
            ||...|               |::...:...|.|.|.|..:..|:|:..: .||..         
Mouse   106 SWDSLP---------------DELLLGIFSCLCLPELLRVSGVCKRWYRL-SLDES--------- 145

  Fly   162 DVCTLTHRVIKRLMLLSGKHIHCVTGGPLHPNWPYLTEFVQLL--GV---SCPNLTELSFFK--- 218
                     :.:.:.|:||::|           |.:|  |:||  ||   .||.    ||.:   
Mouse   146 ---------LWQSLDLAGKNLH-----------PDVT--VRLLSRGVVAFRCPR----SFMEQPL 184

  Fly   219 -ISVSLAHMTHLFDGANGLINITNIS--LRRCN-LKDAHIYCLQMLSKL-KSLDIREN---FSIK 275
             .|.|...:.|: |.:|.:||::|:.  |..|: |::..:..||:...: |:|...||   .::.
Mouse   185 GESFSSFRVQHM-DLSNSVINVSNLHKILSECSKLQNLSLEGLQLSDPIVKTLAQNENLVRLNLC 248

  Fly   276 GDS---------LKSLPISLEILNVSGCVDLSPKCLIQLAALSHL----RELRCPGIVKFAKDNE 327
            |.|         |.|....|:.||:|.|.|.:.|.:  .||::||    .:|...|..|..:..:
Mouse   249 GCSGFSESAVATLLSSCSRLDELNLSWCFDFTEKHV--QAAVAHLPNTITQLNLSGYRKNLQKTD 311

  Fly   328 LYGRLAHYCPMLEVLELTDFMNVIQLGGLSRLHTLVIHSSA-----QLDYHVNNVLLTSIAESYS 387
            |. .:...||.|..|:|:|              ::::.:..     ||:|               
Mouse   312 LC-TIIKRCPNLIRLDLSD--------------SIMLKNDCFPEFFQLNY--------------- 346

  Fly   388 LRHLEILDSFGPMSDTSFDLSIFSQLKELRTLILHNQNFTTLHLMGLQKLSTLEFLDLSGSPNLS 452
            |:||.:...:..:.||..:|.....||             ||.:.|:....||:.|         
Mouse   347 LQHLSLSRCYDIIPDTLLELGEIPTLK-------------TLQVFGIVPEGTLQLL--------- 389

  Fly   453 NEVVAKLTKSLSGLRRLKVDFCPLITRQLTKILEGNPKLQV 493
                      ...|.||::: |...|......::....|::
Mouse   390 ----------REALPRLQIN-CAYFTTIARPTMDSKKNLEI 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14891NP_650560.1 RRM 41..92 CDD:214636
leucine-rich repeat 211..237 CDD:275381 7/29 (24%)
LRR <235..>463 CDD:443914 54/252 (21%)
leucine-rich repeat 239..262 CDD:275381 6/25 (24%)
leucine-rich repeat 263..285 CDD:275381 8/34 (24%)
leucine-rich repeat 286..338 CDD:275381 16/55 (29%)
leucine-rich repeat 339..387 CDD:275381 7/52 (13%)
leucine-rich repeat 388..415 CDD:275381 7/26 (27%)
leucine-rich repeat 416..439 CDD:275381 3/22 (14%)
leucine-rich repeat 440..465 CDD:275381 2/24 (8%)
Skp2XP_011243661.1 F-box_FBXL1 107..147 CDD:438886 11/73 (15%)
leucine-rich repeat 147..177 CDD:275381 12/42 (29%)
leucine-rich repeat 193..217 CDD:275381 8/24 (33%)
LRR <194..>379 CDD:443914 53/230 (23%)
leucine-rich repeat 218..241 CDD:275381 5/22 (23%)
leucine-rich repeat 242..267 CDD:275381 4/24 (17%)
leucine-rich repeat 268..293 CDD:275381 11/26 (42%)
leucine-rich repeat 295..321 CDD:275381 5/26 (19%)
leucine-rich repeat 322..346 CDD:275381 6/37 (16%)
leucine-rich repeat 347..366 CDD:275381 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.

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