DRSC/TRiP Functional Genomics Resources

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Protein Alignment Decay and casp6b.1

DIOPT Version :9

Sequence 1:NP_477462.1 Gene:Decay / 42008 FlyBaseID:FBgn0028381 Length:308 Species:Drosophila melanogaster
Sequence 2:XP_005164109.1 Gene:casp6b.1 / 791531 ZFINID:ZDB-GENE-041010-48 Length:279 Species:Danio rerio


Alignment Length:279 Identity:99/279 - (35%)
Similarity:143/279 - (51%) Gaps:34/279 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PTSELDLKRIIISRPTNEDTYENCARAGIALILNHK--DVK-GQKQRVGTERDRDDMEATLQGFG 90
            |..|.|::.               ||.|:|||.|.|  |.| |.|.|.||::||||:.:..|...
Zfish    25 PNQEYDMRH---------------ARRGMALIFNQKQFDWKLGLKTRNGTDKDRDDLVSRFQELN 74

  Fly    91 FDVRTFDDLTFSEINDTLKEVAREDHSQNDCFVLAVMSHGTEGKVYAKDMSYPVERLWNPFLGDN 155
            |:|:.::|.:..::...::|.:..||...||||...:|||.:|.|||.|....:..:.:.|.||.
Zfish    75 FEVKAYNDYSRDDVLLKIQEASAADHVDADCFVCIFLSHGEDGHVYANDKKIEIPEITDLFKGDK 139

  Fly   156 CKTLKNKPKLFFIQACRGANLEKAVEFSSFAVMTRELVPEPAAAVQP-ITYAIPSTADILVFYST 219
            |::|..|||:|..|||||..|:.||        |...|.:...||.. :.|.:|:.||.::.|||
Zfish   140 CRSLVGKPKIFIWQACRGDKLDDAV--------TEMSVEDVEMAVDAGVLYTLPAGADFIMCYST 196

  Fly   220 FDKFFSFRNVDDGSWFIQSLCRVLDQAAANEAATPEGVELLRLLTAVNRKVAYEYQSNTKNEALN 284
            .:.|.|||...:|||:||.||.:|.:..:.       ::...:||.||.||:.....|.:|.|..
Zfish   197 AEGFCSFREPLNGSWYIQDLCEILGRYHSE-------LQFTDILTLVNMKVSLRSVPNCRNRAAI 254

  Fly   285 QMKEMPNFMSTLTKTFQLR 303
            ..|:||.|.|.|||....|
Zfish   255 GKKQMPCFASMLTKRLFFR 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DecayNP_477462.1 CASc 54..302 CDD:237997 94/251 (37%)
casp6b.1XP_005164109.1 CASc 29..272 CDD:237997 96/272 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587217
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D417543at33208
OrthoFinder 1 1.000 - - FOG0000242
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10454
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.950

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