DRSC/TRiP Functional Genomics Resources

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Protein Alignment Decay and Casp2

DIOPT Version :9

Sequence 1:NP_477462.1 Gene:Decay / 42008 FlyBaseID:FBgn0028381 Length:308 Species:Drosophila melanogaster
Sequence 2:XP_038964243.1 Gene:Casp2 / 64314 RGDID:69274 Length:470 Species:Rattus norvegicus


Alignment Length:342 Identity:75/342 - (21%)
Similarity:140/342 - (40%) Gaps:65/342 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FSLFGQKNKHKKDKADATKIAHT-------PTSELDLKRIIISRPTNEDTYE---------NCAR 54
            ||:......||:.:.....:.|:       |..::        :|...:.|:         ....
  Rat   142 FSVCESCPPHKQSRLSTDTMEHSLDNGDGPPCLQV--------KPCTPEFYQAHYQLAYRLQSQP 198

  Fly    55 AGIALILNHKDVKGQKQ---RVGTERDRDDMEATLQGFGFDVRTFDDLTF--------------- 101
            .|:||::::....|:|.   |.|.:.|...:....:..|::|....|.|.               
  Rat   199 RGLALVMSNVHFTGEKDLEFRSGGDVDHTTLVTLFKLLGYNVHVLYDQTAQFHRFQLYSGIYKKY 263

  Fly   102 ---SEINDTLKEVAR-EDHSQNDCFVLAVMSHGTEGKVYAKD-MSYPVERLWNPFLGDNCKTLKN 161
               .|:.:.|:..|: ..|...|..::|::|||.||.:|..| ....::.::..|...||.:|:|
  Rat   264 PKGQEMQEKLQNFAQLPAHRVTDSCIVALLSHGVEGGIYGVDGKLLQLQEVFRLFDNANCPSLQN 328

  Fly   162 KPKLFFIQACRGANLEKAVEFSSFAVMTRELVPEP------AAAVQPITYAIPSTADILVFYSTF 220
            |||:||||||||...::.|:...    .:.....|      |...:.:...:|:.:|::..|:..
  Rat   329 KPKMFFIQACRGDETDRGVDQQD----GKNHAQSPGCEESDAGKEELMKMRLPTRSDMICGYACL 389

  Fly   221 DKFFSFRNVDDGSWFIQSLCRVLDQAAANEAATPEGVELLRLLTAVNRKVAYEYQSNTKNEALNQ 285
            ....:.||...|||:|::|.:|..:.|.:       :.:..:|..||..:. |.:........::
  Rat   390 KGNAAMRNTKRGSWYIEALTQVFSERACD-------MHVADMLVKVNALIK-EREGYAPGTEFHR 446

  Fly   286 MKEMPNFMSTLTKTFQL 302
            .|||..:.|||.:...|
  Rat   447 CKEMSEYCSTLCQQLYL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DecayNP_477462.1 CASc 54..302 CDD:237997 66/276 (24%)
Casp2XP_038964243.1 CARD_CASP2 32..118 CDD:260040
CASc 192..465 CDD:214521 67/284 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166346253
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3573
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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