DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad89D and pcdh18b

DIOPT Version :9

Sequence 1:NP_650554.3 Gene:Cad89D / 42006 FlyBaseID:FBgn0038439 Length:2240 Species:Drosophila melanogaster
Sequence 2:XP_005157386.1 Gene:pcdh18b / 562031 ZFINID:ZDB-GENE-080804-1 Length:1161 Species:Danio rerio


Alignment Length:1428 Identity:289/1428 - (20%)
Similarity:480/1428 - (33%) Gaps:478/1428 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   767 LRPVIEEINMNVIHFHV-EENVVGGIIGQLLYKNGINLVNNELGTYREMPSEPTSRNITMGSRFR 830
            |..|...::...:.:.| ||..||.:|.:|  |..:      .|...::||       ::..|||
Zfish    24 LAAVAHNVSGKTLKYKVLEEQRVGTVIARL--KEDV------AGLLAKLPS-------SVSPRFR 73

  Fly   831 SRNRSRSSKSKRRLPRRLVGDANIKLRYIIANQQEVVNKISITEDGTLLTLTGLDREQQPSYELT 895
            :..|..:.....|                             .|||.:...|.:|||:.....|.
Zfish    74 AMQRGSTPLLSVR-----------------------------EEDGEISIATKIDREKLCEKNLN 109

  Fly   896 VIVEYS--TGLVSGAGIYQVNIKVDDVNDNAPKFNALTYVGLINENCVVGTELSMNHAILIQDAD 958
            ..:|:.  |.......::.:.::|.|:|||:|:|:.......|:|:..|||...::.|:   |.|
Zfish   110 CTIEFDVITIPTEYLQLFHIQVEVLDINDNSPQFSRAIIPIEISESASVGTRFPLDSAV---DPD 171

  Fly   959 EGPNAEFRVQLQGDYSDEFSIEYVNGTSSENSTHHKMPSTTGAFNIFNLTDQWNDEFKYQELHTT 1023
            .|.||                                                        ||| 
Zfish   172 VGENA--------------------------------------------------------LHT- 179

  Fly  1024 FMQTNFKLSSGPYFRISYTGK------------RGLDREKQQLYNLKIIAADTG--GLSGYAHLT 1074
                 :.|:...:|:|....:            |.||||.|..|.|::.|:|:|  ..||...|.
Zfish   180 -----YSLTRNNFFKIDIRTRTDGAKYADLVVMRELDRETQSSYQLQLTASDSGVPPKSGSTLLK 239

  Fly  1075 VLVADVNDNAPMFER----ISVFKDSRLE---IREYTTDME-------IYFVESSSGMTAPQATA 1125
            :.::|.|||:|.|:.    :::.::|.|.   :....||.:       :|   |.|....|:...
Zfish   240 ISISDSNDNSPAFDEQAYVVNLLENSSLGTLLVDLNATDPDEGNNGKIVY---SFSSHVPPKILE 301

  Fly  1126 AMMLAPPPYHIPGSPRFNVDRERSVGAGLGVVARAKSRRRM---------------------VRA 1169
            ...:.|...||....:  ||.|.:....:.|.|:......:                     :..
Zfish   302 TFKINPDNGHITLIKK--VDYETTSSYEIDVQAQDMGPNSIPGHCKIIIKVVDVNDNKPKININL 364

  Fly  1170 LTT-KCPLFAIYEDTPVGTKVLQLSASDEDFGKNALLHYELQGEQVERTPGMPMLRVHGVKYFAI 1233
            :|. |..:..|.|.:||.|.:..:...|.|.|.|        ||.|        .|:||..:|.:
Zfish   365 MTQGKEEVAYISEASPVDTFIALVRVDDSDSGIN--------GEVV--------CRLHGHGHFRL 413

  Fly  1234 DKLSGELSVNYPLSANI--------EIMLNLTVTDIDGLKDSTCLRFT--VMDVNNHAPTFKKSW 1288
            .|   ....||.:..|:        |..|.:...|......||...||  |.|.|::.|.|:||.
Zfish   414 QK---TYENNYMILTNVSLDREKRSEYSLTVIAEDRGTPSLSTIKHFTVQVQDENDNPPRFEKSR 475

  Fly  1289 YSFDTPEGEYKDSVLGQLTAIDMDFGENANITYTLSDSHLP-------FTIKPASGVLKIGGQLD 1346
            |.....|.....:.|..:.|.|.|.|.|..:||::.:|.:.       .||.|::|.:......|
Zfish   476 YEIFKSENNSPGAYLTSVVATDPDLGPNGQVTYSIVESQVQGSSISTYVTIDPSNGAVYALRSFD 540

  Fly  1347 RELKDKYSFQVIATD-NAPVMQRMSSSVDVEVNVLDINDNRPEFIGYDDQTKAVKFIPSVADRTL 1410
            ||...:.||.|.|.| .:|..  :||:..|.:.:||.|||.|..:.           |.:::.|.
Zfish   541 REEVGRLSFTVQARDGGSPAF--LSSNTTVLLTILDENDNPPIIVA-----------PLLSNHTA 592

  Fly  1411 MLPVYKAYLDRSTQPGTFVRQLTAIDKDN-----------VGNGNGLVLYSIRHQEMQAPLFQID 1464
            .:|::     |..:.|..|..:.|.|:|.           .||..||.:...|..|::.      
Zfish   593 EVPLW-----RHAESGHLVTIIKATDRDAGANSELTCSIVGGNDEGLFVIDPRRCELRT------ 646

  Fly  1465 SRDGTISTISRINGYNDYEHLNVSVIASDVG-SPALSATAIVIVNLQGQAVTDPPKSTPKPEPPA 1528
              :|::....|       |..:::::..|.| |..|||.|::.::|:     |.|:|        
Zfish   647 --NGSVEASGR-------EGFDLAILVQDRGASIRLSARAVLHISLR-----DYPES-------- 689

  Fly  1529 NVTVFQHAYYEVKLTE-NNEAPIEV-MRLNLSAGLNPENYRWSLWLEEGLDETDAHPPFEYDAKN 1591
                     |.:..:: ||::|::| |.:.:|.|.                           ...
Zfish   690 ---------YSLNPSDINNQSPLDVSMIIIISLGA---------------------------ICG 718

  Fly  1592 MLLYALKPFDREHISRYQLRIRADRLSREARNYARVSYPVVDERIEGLSLNECRILVHIADEN-D 1655
            :||..:..|             |.|.|||.:: .|.||             .||    :|:.. .
Zfish   719 VLLIVMVMF-------------ATRCSREQKD-PRHSY-------------NCR----VAESTYQ 752

  Fly  1656 NAPK------FRG--------NGQPIVAVLPQSASFG-YPVTR--------------VEANDLDE 1691
            |.||      .:|        ||...|...|:|.|.. .|.:|              :.:|.:.|
Zfish   753 NHPKKPARQIHKGDITLVPTINGTLPVRAHPRSPSASPAPESRQSHHSRQSLNSLVTISSNHVPE 817

  Fly  1692 GLNAEIRYRLLNEPARLFGIDELSGNIRLLGELSRTEHIYGFDVKATDRMGADDGRSGIVNVFVY 1756
            ....|:.:  ...|     ::::|..:.:|       |...:..:.:.| |....||     :.|
Zfish   818 NFALELAH--ATPP-----VEQVSQLLSIL-------HQGQYQPRPSFR-GNKYTRS-----YRY 862

  Fly  1757 IINEAKQVRLVVAG--------MPVEVERRIEGLMEALSDAIGKDVRVRLLE------------- 1800
            .:||..:..|..:|        ...|:.|....|.|..|:....|...||..             
Zfish   863 ALNEMDKFSLKDSGRGDSEAGDSDCEMGRESPLLGEGFSELFTPDGHHRLHPTMKLCTEECRVLG 927

  Fly  1801 ----------PYSGGLEPATNAYIYAVDPHTNSIMEMEQLQDALAGLQLDALQLQQQKLDGGKPM 1855
                      |.....:..:|.||...||...:..|:.|                     .|:..
Zfish   928 HSDQCWMPPLPSPASSDYRSNLYIPGEDPQQKATPEVPQ---------------------SGEST 971

  Fly  1856 PRILELAEFGQLARPAHASASSFMGGLEFVTVVLLALISLGALIAACCYVCMRQKRRLWSQRD-F 1919
            .|....:.||:.:......|..   |.:......| |..:.::.          :|.|.|..| :
Zfish   972 LRKKSFSTFGKESEEGEGEADD---GEDLCGTTSL-LSEMNSVF----------QRLLPSSLDNY 1022

  Fly  1920 SASD--AGLTYTIAGIGSPR-------GQKQRRQRQQR--------HTQRCSKG------STGSQ 1961
            |.::  ...|...||:||..       |:......||.        |.|....|      .|...
Zfish  1023 SETNETEKATACAAGVGSLERRKGHLPGKPSPATYQQNVAVWAANTHFQNPGHGHAPASHMTALV 1087

  Fly  1962 RPTSAFMPESVCSSAQTQSTATATEKLEQQLHHHHQQQAMATQQQHHQYLNEQQRQQKREYID 2024
            .|..|.:|..:.:||.......|.|::.:    :|::..:.:...|   |:.::...:.|.:|
Zfish  1088 APLPAPLPAPMPASASCSKWLPAMEEIPE----NHEEDELESVLGH---LHGKRCDSRSEIMD 1143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad89DNP_650554.3 Cadherin_repeat 183..290 CDD:206637
Cadherin_repeat 325..407 CDD:206637
Cadherin_repeat 416..524 CDD:206637
Cadherin_repeat 534..626 CDD:206637
Cadherin_repeat 641..>714 CDD:206637
CA 851..925 CDD:214520 15/75 (20%)
CA 1026..1085 CDD:214520 21/72 (29%)
Cadherin_repeat 1177..1280 CDD:206637 30/112 (27%)
Cadherin_repeat 1289..1385 CDD:206637 30/103 (29%)
Cadherin_repeat 1414..1510 CDD:206637 22/107 (21%)
CA 1576..1658 CDD:214520 15/82 (18%)
Cadherin_repeat 1666..1760 CDD:206637 18/108 (17%)
pcdh18bXP_005157386.1 E_set 35..117 CDD:298831 25/125 (20%)
Cadherin_repeat 147..248 CDD:206637 33/165 (20%)
Cadherin_repeat 257..356 CDD:206637 16/103 (16%)
Cadherin_repeat 372..467 CDD:206637 30/113 (27%)
Cadherin_repeat 476..578 CDD:206637 30/103 (29%)
Cadherin_repeat 591..685 CDD:206637 25/118 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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