DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad89D and shg

DIOPT Version :9

Sequence 1:NP_650554.3 Gene:Cad89D / 42006 FlyBaseID:FBgn0038439 Length:2240 Species:Drosophila melanogaster
Sequence 2:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster


Alignment Length:1524 Identity:301/1524 - (19%)
Similarity:488/1524 - (32%) Gaps:597/1524 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   416 YNISIVENLPTGFSVLQVNAVDRDQGENSEFLYNLVETKDAAGAFRIDSRTGWITVRDDRLLDRE 480
            |...:.|..|....||.|.|||.|  .:....|::|::......|.|:..||  .:......||:
  Fly    93 YAPKVKEEQPENTYVLTVEAVDPD--PDQVIRYSIVQSPFERPKFFINPSTG--VIFTTHTFDRD 153

  Fly   481 Q---RRSIQLNVEALERNPSYLDDKHLKKPGPSKVQVEITLLDTNDNTPKFEHGNLYEFKVPINA 542
            :   .:.:.:.|:|.:.....|||         .....:|:.|.|||.|.|.... |:..:..||
  Fly   154 EPIHEKFVFVTVQATDNGLPPLDD---------VCTFNVTIEDINDNAPAFNKAR-YDESMSENA 208

  Fly   543 PTGYVIGQVVAHDPDEGPNGHLLYELQRPKGSGYIPFRLDNKNGTIYVGGPL--RRGR-IAVFVE 604
            ....|:..:.|.|.|:|.|..:.||:.|.:...|  |::|.::|.||:..|:  |.|: .|:.|.
  Fly   209 QPDAVVMTISASDFDDGNNSLVEYEILRERDFQY--FKIDKESGIIYLKRPIDKRPGQSYAIIVR 271

  Fly   605 ATD-QPTNPSERRFSLAVITIEVYATIDDQAIDFVGAPYEFWVGANTPLGTSVGQVRTTLIYEGG 668
            |.: .|..|.:.:       |||...:.:.:|    .|..|....:||                 
  Fly   272 AYNVVPDPPQDAQ-------IEVRIRVVESSI----KPPSFVNPIDTP----------------- 308

  Fly   669 DEIMYDLLHTYSEGVPFAIEERSGIITVIRELSEFKRKVYQFEAVANYLFANSSQSLVMSRSSSP 733
                                                  :|..|.:.|:              :.|
  Fly   309 --------------------------------------IYLKENLKNF--------------THP 321

  Fly   734 LTTIASPAELSDEGVLITNLTIHIVNKPEQKVPLRPVIEEINMNVIHFHVEENVVGGIIGQLLYK 798
            :.|:.:.:.:.|              |||       ||.|:|                       
  Fly   322 IATLRAVSNMPD--------------KPE-------VIFELN----------------------- 342

  Fly   799 NGINLVNNELGTYREMPSEPTSRNITMGSRFRSRNRSRSSKSKRRLPRRLVGDANIKLRYIIANQ 863
                                             ..|:..:.||..               .:.||
  Fly   343 ---------------------------------TGRTEQTNSKNT---------------FVFNQ 359

  Fly   864 QEVVNKISITEDGTLLTLTGLDREQQPSYELTVIVEYSTGLVSGAGIYQVNIKVDDVNDNAPKFN 928
              :.|:::|:...|      ||.|....|.||:||..:..|.:.   :|:.|:|:|||||.|.:.
  Fly   360 --IGNEVTISLGKT------LDYEAITDYTLTMIVRNTHELGTE---HQIKIQVEDVNDNIPYYT 413

  Fly   929 ALTYVGLINENCVVGTELSMNHAILIQDADEGPNAEFRVQLQGDYSDEFSIEYVNGTSSENSTHH 993
            .:. .|.|.||...||.:....|.   |.|                         |||:.|... 
  Fly   414 EVK-SGTILENEPPGTPVMQVRAF---DMD-------------------------GTSANNIVS- 448

  Fly   994 KMPSTTGAFNIFNLTDQWNDEFKYQELHTTFMQTNFKLSSGPYFRI-----SYTGKRGLDREKQQ 1053
                       |.|.|  |.|                     ||.|     :.|.....|||::.
  Fly   449 -----------FELAD--NRE---------------------YFTIDPNTGNITALTTFDREERD 479

  Fly  1054 LYNLKIIAADTGGLS---------GYAHLTVLVADVNDNAPMFERISVFKDSRLEIREYTTDMEI 1109
            .||:|:||:|....|         |:....:.:.|.||:.|.|::                  :.
  Fly   480 FYNVKVIASDNSPSSLFDNGEPNRGHQVFRISIGDKNDHKPHFQQ------------------DK 526

  Fly  1110 YFVESSSGMTAPQATAAMMLAPPPYHIPGSPRFNVDRERSVGAGLGVVARAKSRRRMVRALTTKC 1174
            |..|                                                             
  Fly   527 YLAE------------------------------------------------------------- 530

  Fly  1175 PLFAIYEDTPVGTKVLQLSASDEDFGKNALLHYELQGEQVERTPGMPMLRVHGVKYFAIDKLSGE 1239
               .:.||....|:|:::.|.|||.....|  |.::...|...             |.|...:|:
  Fly   531 ---RLLEDANTNTEVIEVKAEDEDNASQIL--YSIESGNVGDA-------------FKIGLKTGK 577

  Fly  1240 LSVNYPLSANIEIMLNLTVTDIDGLKDS-TCLRFTVMDVNNHAPTFKKSWYSFDTPEGEYKDSVL 1303
            ::||..|.........|.|...||:.|. |.:...:.|||::.|.||:.:......|..|.|.:|
  Fly   578 ITVNQKLDYETITEYELKVRAFDGIYDDYTTVVIKIEDVNDNPPVFKQDYSVTILEETTYDDCIL 642

  Fly  1304 GQLTAIDMDFGE-NANITYTLSDSHLPFTIK---------PASGVLKIGGQLDRELKDKY-SFQV 1357
             .:.|.|.|..: ||       |.|:.::|.         ..||.|::...|||:..:.: ::||
  Fly   643 -TVEAYDPDIKDRNA-------DQHIVYSIHQNDGNRWTIDNSGCLRLVKTLDRDPPNGHKNWQV 699

  Fly  1358 I--ATDNAPVMQRMSSSVDVEVNVLDINDNRPEFIGYDDQTKAVKFIPSVADRTLMLPVYKAYLD 1420
            :  |.|...|...:|:..:|.|.:.|||||.|..|.                   .:||   |..
  Fly   700 LIKANDEDGVGTTVSTVKEVTVTLKDINDNAPFLIN-------------------EMPV---YWQ 742

  Fly  1421 RSTQPGTFVRQLTAIDKDNV-GNGNGLVLYSIRHQEMQAPLFQIDSRDGTISTISRINGYNDYEH 1484
            .:..||..| ||.|.|.|:. |.||.              .|.||| :.|....::.:...||.|
  Fly   743 ENRNPGHVV-QLQANDYDDTPGAGNF--------------TFGIDS-EATPDIKTKFSMDGDYLH 791

  Fly  1485 LNVS------------VIASDVGSPALSATAI---VIVNLQGQAVTDPPKSTPKPEPPANVTVFQ 1534
            .||.            :..||.|.|..||.:|   ||.::...|:::           .:..:|.
  Fly   792 ANVQFDREAQKEYFIPIRISDSGVPRQSAVSILHLVIGDVNDNAMSE-----------GSSRIFI 845

  Fly  1535 HAYYEVKLTENNEAPIEVMRLNLSAGLNPENYRWSLWLEEGLDETDAHPPF-----EYDAKNMLL 1594
            :.|       ..|||                            |||....|     ::|.::   
  Fly   846 YNY-------KGEAP----------------------------ETDIGRVFVDDLDDWDLED--- 872

  Fly  1595 YALKPFDREHISRYQLRIRADRLSREARNYARVSYPVVDERIEGLSLNECRILVHIAD-ENDNAP 1658
               |.|:.:.:...|.|:..                         |.....:|||.|: |.|   
  Fly   873 ---KYFEWKDLPHDQFRLNP-------------------------STGMITMLVHTAEGEYD--- 906

  Fly  1659 KFRGNGQPIVAVLPQSASFGYPVTRVEANDLDEGLNAEIRYRLLNEPARLFGIDELSGNIRLLGE 1723
                    :..|:.:.:.|      |..:.:|..:...:|.  |.|.|    :|: ||:||.: .
  Fly   907 --------LSFVVTEDSMF------VPRHSVDAYVTVVVRE--LPEEA----VDK-SGSIRFI-N 949

  Fly  1724 LSRTEHI-YGFDVKATDRMGADDG---------RSGIVNVFVYII----NEAKQVRLVVAGMPVE 1774
            :::.|.| ...|.::.|.:...|.         .:.:.||.|:.:    |....||....|.|..
  Fly   950 VTKEEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENHTLDVRFSAHGSPYY 1014

  Fly  1775 VERRIEGLMEALSDAIGKDVRVR---------LLEPYSGGLEPATN-----AYIYAVDPHTNSIM 1825
            ...::.|::......:..::.::         |:|.:... |..||     :..|.:..:|.|.:
  Fly  1015 APEKLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCE-ESCTNELHKSSVPYMIYSNTTSFV 1078

  Fly  1826 EMEQLQDALAGLQLDALQLQQQKLDGGKP 1854
            .:.....|....:   ..|.::.|:||.|
  Fly  1079 GVNAFVQAQCVCE---APLMRRCLNGGSP 1104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad89DNP_650554.3 Cadherin_repeat 183..290 CDD:206637
Cadherin_repeat 325..407 CDD:206637
Cadherin_repeat 416..524 CDD:206637 26/110 (24%)
Cadherin_repeat 534..626 CDD:206637 27/95 (28%)
Cadherin_repeat 641..>714 CDD:206637 6/72 (8%)
CA 851..925 CDD:214520 22/73 (30%)
CA 1026..1085 CDD:214520 18/72 (25%)
Cadherin_repeat 1177..1280 CDD:206637 26/103 (25%)
Cadherin_repeat 1289..1385 CDD:206637 29/108 (27%)
Cadherin_repeat 1414..1510 CDD:206637 32/111 (29%)
CA 1576..1658 CDD:214520 16/87 (18%)
Cadherin_repeat 1666..1760 CDD:206637 21/107 (20%)
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 26/110 (24%)
Cadherin_repeat 200..292 CDD:206637 29/100 (29%)
CA 332..410 CDD:214520 33/180 (18%)
Cadherin_repeat 417..518 CDD:206637 35/163 (21%)
Cadherin_repeat 531..619 CDD:206637 26/102 (25%)
Cadherin_repeat 627..729 CDD:206637 29/109 (27%)
Cadherin_repeat 736..834 CDD:206637 33/116 (28%)
LamG 1127..1294 CDD:238058
Cadherin_C 1358..1489 CDD:279398
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464694
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24026
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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