DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad89D and cdh12

DIOPT Version :10

Sequence 1:NP_650554.3 Gene:Cad89D / 42006 FlyBaseID:FBgn0038439 Length:2240 Species:Drosophila melanogaster
Sequence 2:XP_017950450.2 Gene:cdh12 / 100489783 XenbaseID:XB-GENE-982876 Length:826 Species:Xenopus tropicalis


Alignment Length:98 Identity:20/98 - (20%)
Similarity:35/98 - (35%) Gaps:30/98 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 PTYADFTNAQV---LNHQQEMLQMNFPTPLSTSYMNTAQVTQTHQMPFNIFELNLSNFATFQPAC 102
            |||.:.||.::   .....:.....|....||:|         .|.|.::......::.:...:|
 Frog   153 PTYVEPTNDEICEAFRKDPKEYANQFMWEYSTNY---------GQAPLSLLVSYTKSYLSMVGSC 208

  Fly   103 DTPLPLLNSSPTHPY-------------TTMSN 122
            .|     ::|||..:             ||:||
 Frog   209 CT-----SASPTVCFLKERLQLKHLSLLTTLSN 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad89DNP_650554.3 Cadherin_repeat 183..290 CDD:206637
Cadherin_repeat 325..407 CDD:206637
Cadherin_repeat 416..524 CDD:206637
Cadherin_repeat 534..626 CDD:206637
Cadherin_repeat 641..>714 CDD:206637
CA 851..925 CDD:214520
CA 1026..1085 CDD:214520
Cadherin_repeat 1177..1280 CDD:206637
Cadherin_repeat 1289..1385 CDD:206637
Cadherin_repeat 1414..1510 CDD:206637
CA 1576..1658 CDD:214520
Cadherin_repeat 1666..1760 CDD:206637
cdh12XP_017950450.2 CA 113..191 CDD:214520 10/46 (22%)
Cadherin_repeat 197..298 CDD:206637 9/45 (20%)
Cadherin_repeat 306..413 CDD:206637
Cadherin_repeat 422..517 CDD:206637
Cadherin_repeat 525..623 CDD:206637
CADH_Y-type_LIR 757..816 CDD:460041
Blue background indicates that the domain is not in the aligned region.

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